31 items (Cyprinodon variegatus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSCVAP00000010382	Zgc:174906. (216 aa)
	thoc1	THO complex 1. (654 aa)
	LOC107085087	Nerve growth factor receptor b. (509 aa)
	LOC107104273	Uncharacterized protein. (373 aa)
	unc5a	Unc-5 netrin receptor A. (914 aa)
	LOC107087477	Uncharacterized protein. (367 aa)
	dapk1	Death-associated protein kinase 1. (1445 aa)
	ENSCVAP00000027162	Death domain-containing protein. (160 aa)
	LOC107095080	Death domain-containing protein. (215 aa)
	tradd	Tnfrsf1a-associated via death domain. (292 aa)
	ENSCVAP00000022348	Si:dkeyp-97b10.3. (398 aa)
	LOC107094654	Uncharacterized protein. (445 aa)
	myd88	Myeloid differentiation primary response protein MyD88; Adapter protein involved in the Toll-like receptor and IL-1 receptor signaling pathway in the innate immune response. (288 aa)
	unc5c	Unc-5 netrin receptor C. (954 aa)
	ENSCVAP00000016828	Uncharacterized protein. (914 aa)
	LOC107088506	Uncharacterized protein. (319 aa)
	LOC107099932	Unc-5 netrin receptor B. (919 aa)
	Ank3	Death domain-containing protein. (117 aa)
	LOC107101768	Uncharacterized protein. (196 aa)
	LOC107082315	Neurotrophin receptor associated death domain. (395 aa)
	ENSCVAP00000008478	Death domain-containing protein. (150 aa)
	CRADD	CASP2 and RIPK1 domain containing adaptor with death domain. (209 aa)
	nfkb1	Nuclear factor of kappa light polypeptide gene enhancer in B-cells 1. (893 aa)
	LOC107084435	Unc-5 netrin receptor C. (923 aa)
	LOC107092921	Uncharacterized protein. (1946 aa)
	ripk1	Receptor (TNFRSF)-interacting serine-threonine kinase 1, like. (627 aa)
	LOC107096158	P53-induced death domain protein 1. (918 aa)
	tnfrsf21	Tumor necrosis factor receptor superfamily, member 21. (684 aa)
	LOC107092852	Tumor necrosis factor receptor superfamily, member a. (308 aa)
	unc5d	Unc-5 netrin receptor Da. (865 aa)
	tnfrsf1a	Tumor necrosis factor receptor superfamily, member 1a. (383 aa)

Your Current Organism:

Cyprinodon variegatus

NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC107082315	LOC107085087	ENSCVAP00000009153	ENSCVAP00000031221	Neurotrophin receptor associated death domain.	Nerve growth factor receptor b.	0.907
LOC107085087	LOC107082315	ENSCVAP00000031221	ENSCVAP00000009153	Nerve growth factor receptor b.	Neurotrophin receptor associated death domain.	0.907
LOC107087477	ripk1	ENSCVAP00000027493	ENSCVAP00000004942	Uncharacterized protein.	Receptor (TNFRSF)-interacting serine-threonine kinase 1, like.	0.776
LOC107087477	tradd	ENSCVAP00000027493	ENSCVAP00000022735	Uncharacterized protein.	Tnfrsf1a-associated via death domain.	0.772
LOC107088506	LOC107092852	ENSCVAP00000015716	ENSCVAP00000001312	Uncharacterized protein.	Tumor necrosis factor receptor superfamily, member a.	0.711
LOC107088506	LOC107094654	ENSCVAP00000015716	ENSCVAP00000020574	Uncharacterized protein.	Uncharacterized protein.	0.711
LOC107088506	LOC107104273	ENSCVAP00000015716	ENSCVAP00000027821	Uncharacterized protein.	Uncharacterized protein.	0.619
LOC107088506	ripk1	ENSCVAP00000015716	ENSCVAP00000004942	Uncharacterized protein.	Receptor (TNFRSF)-interacting serine-threonine kinase 1, like.	0.846
LOC107088506	tnfrsf1a	ENSCVAP00000015716	ENSCVAP00000000255	Uncharacterized protein.	Tumor necrosis factor receptor superfamily, member 1a.	0.709
LOC107088506	tradd	ENSCVAP00000015716	ENSCVAP00000022735	Uncharacterized protein.	Tnfrsf1a-associated via death domain.	0.844
LOC107092852	LOC107088506	ENSCVAP00000001312	ENSCVAP00000015716	Tumor necrosis factor receptor superfamily, member a.	Uncharacterized protein.	0.711
LOC107092852	LOC107094654	ENSCVAP00000001312	ENSCVAP00000020574	Tumor necrosis factor receptor superfamily, member a.	Uncharacterized protein.	0.900
LOC107092852	LOC107101768	ENSCVAP00000001312	ENSCVAP00000011482	Tumor necrosis factor receptor superfamily, member a.	Uncharacterized protein.	0.901
LOC107092852	LOC107104273	ENSCVAP00000001312	ENSCVAP00000027821	Tumor necrosis factor receptor superfamily, member a.	Uncharacterized protein.	0.970
LOC107092852	ripk1	ENSCVAP00000001312	ENSCVAP00000004942	Tumor necrosis factor receptor superfamily, member a.	Receptor (TNFRSF)-interacting serine-threonine kinase 1, like.	0.753
LOC107092852	tnfrsf1a	ENSCVAP00000001312	ENSCVAP00000000255	Tumor necrosis factor receptor superfamily, member a.	Tumor necrosis factor receptor superfamily, member 1a.	0.441
LOC107092852	tradd	ENSCVAP00000001312	ENSCVAP00000022735	Tumor necrosis factor receptor superfamily, member a.	Tnfrsf1a-associated via death domain.	0.764
LOC107094654	LOC107088506	ENSCVAP00000020574	ENSCVAP00000015716	Uncharacterized protein.	Uncharacterized protein.	0.711
LOC107094654	LOC107092852	ENSCVAP00000020574	ENSCVAP00000001312	Uncharacterized protein.	Tumor necrosis factor receptor superfamily, member a.	0.900
LOC107094654	LOC107101768	ENSCVAP00000020574	ENSCVAP00000011482	Uncharacterized protein.	Uncharacterized protein.	0.901