(49 nodes) Bromodomain network (Cyprinodon variegatus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC107093412	Bromodomain containing 4. (1508 aa)
	LOC107087168	SP110 nuclear body protein, tandem duplicate 3. (600 aa)
	crebbp	CREB binding protein b. (2380 aa)
	LOC107086721	Bromodomain and PHD finger containing, 3b. (1245 aa)
	BRD1	Bromodomain containing 1. (1070 aa)
	LOC107085563	Tripartite motif containing 66. (1224 aa)
	LOC107097904	Bromodomain containing 3a. (665 aa)
	LOC107103723	Bromodomain containing 2. (823 aa)
	kat2a	Histone acetyltransferase; Belongs to the acetyltransferase family. GCN5 subfamily. (793 aa)
	ENSCVAP00000008682	Bromo domain-containing protein. (625 aa)
	brd9	Bromodomain containing 9. (659 aa)
	ENSCVAP00000009547	Uncharacterized protein. (287 aa)
	phip	Pleckstrin homology domain interacting protein. (1679 aa)
	atad2b	ATPase family AAA domain containing 2B. (1474 aa)
	taf1	Transcription initiation factor TFIID subunit. (1847 aa)
	baz2b	Bromodomain adjacent to zinc finger domain, 2Ba. (2412 aa)
	LOC107090896	Uncharacterized protein. (475 aa)
	brpf1	Uncharacterized protein. (1279 aa)
	baz2a	Bromodomain adjacent to zinc finger domain, 2A. (2656 aa)
	Brd3	Bromo domain-containing protein. (136 aa)
	ENSCVAP00000014015	Bromo domain-containing protein. (215 aa)
	baz1b	Bromodomain adjacent to zinc finger domain, 1B. (1579 aa)
	LOC107084057	Ash1 (absent, small, or homeotic)-like (Drosophila). (2925 aa)
	LOC107082985	Uncharacterized protein. (821 aa)
	brd7	Bromodomain containing 7. (618 aa)
	kiaa2026	Bromo domain-containing protein. (2152 aa)
	LOC107083428	CREB binding protein a. (2444 aa)
	LOC107093353	Si:dkey-226m8.10. (243 aa)
	brd1	Bromodomain containing 1a. (1204 aa)
	trim33	Tripartite motif containing 33. (1232 aa)
	LOC107090270	Protein kinase C binding protein 1, like. (1160 aa)
	LOC107093101	Bromodomain PHD finger transcription factor. (2596 aa)
	bptf	Bromodomain PHD finger transcription factor. (2927 aa)
	ep300	E1A binding protein p300 b. (2766 aa)
	zmynd8	Zinc finger, MYND-type containing 8. (1206 aa)
	LOC107083271	Histone acetyltransferase; Belongs to the acetyltransferase family. GCN5 subfamily. (790 aa)
	KMT2A	Histone-lysine N-methyltransferase; Belongs to the class V-like SAM-binding methyltransferase superfamily. Histone-lysine methyltransferase family. TRX/MLL subfamily. (4453 aa)
	baz1a	Bromodomain adjacent to zinc finger domain, 1A. (1029 aa)
	LOC107087675	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4a. (1614 aa)
	LOC107089342	Bromodomain and PHD finger containing, 3a. (1236 aa)
	LOC107090071	Uncharacterized protein. (1383 aa)
	LOC107096119	Polybromo 1, like. (1585 aa)
	cecr2	Bromo domain-containing protein. (1555 aa)
	LOC107085647	Polybromo 1. (1535 aa)
	atad2	ATPase family AAA domain containing 2. (1450 aa)
	LOC107094569	Uncharacterized protein. (910 aa)
	LOC107092878	E1A binding protein p300 a. (2648 aa)
	zmynd11	Zinc finger, MYND-type containing 11. (682 aa)
	LOC107082787	Uncharacterized protein. (1572 aa)

Your Current Organism:

Cyprinodon variegatus

NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BRD1	LOC107086721	ENSCVAP00000003206	ENSCVAP00000020206	Bromodomain containing 1.	Bromodomain and PHD finger containing, 3b.	0.560
BRD1	LOC107089342	ENSCVAP00000003206	ENSCVAP00000023262	Bromodomain containing 1.	Bromodomain and PHD finger containing, 3a.	0.558
BRD1	brd7	ENSCVAP00000003206	ENSCVAP00000017571	Bromodomain containing 1.	Bromodomain containing 7.	0.490
BRD1	brd9	ENSCVAP00000003206	ENSCVAP00000009460	Bromodomain containing 1.	Bromodomain containing 9.	0.524
Brd3	LOC107092878	ENSCVAP00000013817	ENSCVAP00000020689	Bromo domain-containing protein.	E1A binding protein p300 a.	0.400
Brd3	ep300	ENSCVAP00000013817	ENSCVAP00000025385	Bromo domain-containing protein.	E1A binding protein p300 b.	0.400
Brd3	taf1	ENSCVAP00000013817	ENSCVAP00000011835	Bromo domain-containing protein.	Transcription initiation factor TFIID subunit.	0.559
ENSCVAP00000009547	LOC107092878	ENSCVAP00000009547	ENSCVAP00000020689	Uncharacterized protein.	E1A binding protein p300 a.	0.400
ENSCVAP00000009547	ep300	ENSCVAP00000009547	ENSCVAP00000025385	Uncharacterized protein.	E1A binding protein p300 b.	0.400
ENSCVAP00000009547	taf1	ENSCVAP00000009547	ENSCVAP00000011835	Uncharacterized protein.	Transcription initiation factor TFIID subunit.	0.559
ENSCVAP00000014015	LOC107083271	ENSCVAP00000014015	ENSCVAP00000024222	Bromo domain-containing protein.	Histone acetyltransferase; Belongs to the acetyltransferase family. GCN5 subfamily.	0.544
ENSCVAP00000014015	LOC107085647	ENSCVAP00000014015	ENSCVAP00000021874	Bromo domain-containing protein.	Polybromo 1.	0.832
ENSCVAP00000014015	LOC107093353	ENSCVAP00000014015	ENSCVAP00000019946	Bromo domain-containing protein.	Si:dkey-226m8.10.	0.405
ENSCVAP00000014015	LOC107096119	ENSCVAP00000014015	ENSCVAP00000022928	Bromo domain-containing protein.	Polybromo 1, like.	0.832
ENSCVAP00000014015	brd7	ENSCVAP00000014015	ENSCVAP00000017571	Bromo domain-containing protein.	Bromodomain containing 7.	0.740
ENSCVAP00000014015	brd9	ENSCVAP00000014015	ENSCVAP00000009460	Bromo domain-containing protein.	Bromodomain containing 9.	0.641
ENSCVAP00000014015	kat2a	ENSCVAP00000014015	ENSCVAP00000007825	Bromo domain-containing protein.	Histone acetyltransferase; Belongs to the acetyltransferase family. GCN5 subfamily.	0.544
ENSCVAP00000014015	phip	ENSCVAP00000014015	ENSCVAP00000010512	Bromo domain-containing protein.	Pleckstrin homology domain interacting protein.	0.488
KMT2A	LOC107083271	ENSCVAP00000023952	ENSCVAP00000024222	Histone-lysine N-methyltransferase; Belongs to the class V-like SAM-binding methyltransferase superfamily. Histone-lysine methyltransferase family. TRX/MLL subfamily.	Histone acetyltransferase; Belongs to the acetyltransferase family. GCN5 subfamily.	0.516
KMT2A	LOC107083428	ENSCVAP00000023952	ENSCVAP00000019004	Histone-lysine N-methyltransferase; Belongs to the class V-like SAM-binding methyltransferase superfamily. Histone-lysine methyltransferase family. TRX/MLL subfamily.	CREB binding protein a.	0.755