(21 nodes) Synaptotagmin network (Cyprinodon variegatus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC107097210	Synaptotagmin Vb. (424 aa)
	LOC107083922	Synaptotagmin IIa. (431 aa)
	LOC107084039	Synaptotagmin IXa. (563 aa)
	syt1	Synaptotagmin Ia. (422 aa)
	syt3	Synaptotagmin III. (549 aa)
	LOC107083203	Uncharacterized protein. (433 aa)
	syt7	Synaptotagmin VIIb. (563 aa)
	ENSCVAP00000022810	C2 domain-containing protein. (163 aa)
	ENSCVAP00000022246	Synaptotagmin VIIa. (462 aa)
	LOC107098651	Synaptotagmin VIa. (451 aa)
	syt4	Synaptotagmin IV. (472 aa)
	syt10	Synaptotagmin X. (551 aa)
	LOC107089162	Uncharacterized protein. (431 aa)
	LOC107101248	Synaptotagmin Va. (413 aa)
	LOC107094896	Synaptotagmin IXb. (525 aa)
	ENSCVAP00000009295	C2 domain-containing protein. (158 aa)
	LOC107085986	Piccolo presynaptic cytomatrix protein a. (3737 aa)
	syt11	Synaptotagmin XIb. (461 aa)
	ENSCVAP00000005082	Rabphilin 3A homolog (mouse), a. (365 aa)
	doc2b	Double C2-like domain-containing protein. (381 aa)
	LOC107105154	Synaptotagmin-like 2a. (327 aa)

Your Current Organism:

Cyprinodon variegatus

NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCVAP00000009295	LOC107083203	ENSCVAP00000009295	ENSCVAP00000025575	C2 domain-containing protein.	Uncharacterized protein.	0.429
ENSCVAP00000009295	syt11	ENSCVAP00000009295	ENSCVAP00000007718	C2 domain-containing protein.	Synaptotagmin XIb.	0.640
ENSCVAP00000009295	syt4	ENSCVAP00000009295	ENSCVAP00000014634	C2 domain-containing protein.	Synaptotagmin IV.	0.640
ENSCVAP00000022810	LOC107083203	ENSCVAP00000022810	ENSCVAP00000025575	C2 domain-containing protein.	Uncharacterized protein.	0.429
ENSCVAP00000022810	syt11	ENSCVAP00000022810	ENSCVAP00000007718	C2 domain-containing protein.	Synaptotagmin XIb.	0.640
ENSCVAP00000022810	syt4	ENSCVAP00000022810	ENSCVAP00000014634	C2 domain-containing protein.	Synaptotagmin IV.	0.640
LOC107083203	ENSCVAP00000009295	ENSCVAP00000025575	ENSCVAP00000009295	Uncharacterized protein.	C2 domain-containing protein.	0.429
LOC107083203	ENSCVAP00000022810	ENSCVAP00000025575	ENSCVAP00000022810	Uncharacterized protein.	C2 domain-containing protein.	0.429
LOC107083203	LOC107083922	ENSCVAP00000025575	ENSCVAP00000032835	Uncharacterized protein.	Synaptotagmin IIa.	0.444
LOC107083203	LOC107084039	ENSCVAP00000025575	ENSCVAP00000031042	Uncharacterized protein.	Synaptotagmin IXa.	0.474
LOC107083203	LOC107089162	ENSCVAP00000025575	ENSCVAP00000012682	Uncharacterized protein.	Uncharacterized protein.	0.441
LOC107083203	LOC107094896	ENSCVAP00000025575	ENSCVAP00000011314	Uncharacterized protein.	Synaptotagmin IXb.	0.474
LOC107083203	LOC107097210	ENSCVAP00000025575	ENSCVAP00000004792	Uncharacterized protein.	Synaptotagmin Vb.	0.442
LOC107083203	syt1	ENSCVAP00000025575	ENSCVAP00000028922	Uncharacterized protein.	Synaptotagmin Ia.	0.435
LOC107083203	syt11	ENSCVAP00000025575	ENSCVAP00000007718	Uncharacterized protein.	Synaptotagmin XIb.	0.514
LOC107083203	syt4	ENSCVAP00000025575	ENSCVAP00000014634	Uncharacterized protein.	Synaptotagmin IV.	0.514
LOC107083922	LOC107083203	ENSCVAP00000032835	ENSCVAP00000025575	Synaptotagmin IIa.	Uncharacterized protein.	0.444
LOC107083922	LOC107084039	ENSCVAP00000032835	ENSCVAP00000031042	Synaptotagmin IIa.	Synaptotagmin IXa.	0.439
LOC107083922	LOC107094896	ENSCVAP00000032835	ENSCVAP00000011314	Synaptotagmin IIa.	Synaptotagmin IXb.	0.439
LOC107083922	syt11	ENSCVAP00000032835	ENSCVAP00000007718	Synaptotagmin IIa.	Synaptotagmin XIb.	0.640