(30 nodes) G protein alpha subunit, helical insertion network (Cyprinodon variegatus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC107087481	Guanine nucleotide binding protein (G protein), alpha transducing activity polypeptide 2. (350 aa)
	LOC107088982	Uncharacterized protein. (354 aa)
	LOC107088981	Guanine nucleotide binding protein (G protein), alpha 14. (354 aa)
	LOC107097492	Guanine nucleotide binding protein (G protein), alpha inhibiting activity polypeptide 2b. (306 aa)
	LOC107097497	Guanine nucleotide binding protein (G protein), alpha transducing activity polypeptide 1. (350 aa)
	gnao1	Uncharacterized protein. (266 aa)
	gna12	G protein subunit alpha 12. (385 aa)
	LOC107095436	Uncharacterized protein. (490 aa)
	LOC107087493	Guanine nucleotide binding protein (G protein), alpha inhibiting activity polypeptide 3. (354 aa)
	LOC107103628	Guanine nucleotide binding protein (G protein) alpha v1. (360 aa)
	LOC107083170	Uncharacterized protein. (361 aa)
	LOC107097118	Uncharacterized protein. (359 aa)
	LOC107103230	GNAS complex locus. (379 aa)
	LOC107088971	Guanine nucleotide binding protein (G protein), alpha 14. (352 aa)
	LOC107100329	Guanine nucleotide binding protein (G protein), alpha 13b. (378 aa)
	LOC107105117	Guanine nucleotide binding protein (G protein), alpha inhibiting activity polypeptide 2a. (303 aa)
	LOC107097425	Uncharacterized protein. (354 aa)
	LOC107088987	Uncharacterized protein. (357 aa)
	LOC107088968	Guanine nucleotide binding protein (G protein), alpha 14. (355 aa)
	LOC107088970	Guanine nucleotide binding protein (G protein), alpha 14. (355 aa)
	LOC107097117	Guanine nucleotide binding protein (G protein), alpha 14a. (360 aa)
	GNAS	GNAS complex locus. (379 aa)
	LOC107103784	Guanine nucleotide binding protein (G protein), alpha activating activity polypeptide O, b. (354 aa)
	LOC107104314	Uncharacterized protein. (354 aa)
	LOC107100829	Guanine nucleotide binding protein (G protein), alpha 11b (Gq class). (359 aa)
	LOC107099626	Guanine nucleotide binding protein (G protein), alpha 11a (Gq class). (402 aa)
	LOC107099623	Guanine nucleotide binding protein (G protein), alpha 15 (Gq class), tandem duplicate 4. (360 aa)
	LOC107102520	Uncharacterized protein. (413 aa)
	GNAZ	G protein subunit alpha z. (355 aa)
	LOC107100929	Uncharacterized protein. (378 aa)

Your Current Organism:

Cyprinodon variegatus

NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
GNAS	LOC107087481	ENSCVAP00000000939	ENSCVAP00000011325	GNAS complex locus.	Guanine nucleotide binding protein (G protein), alpha transducing activity polypeptide 2.	0.470
GNAS	LOC107097497	ENSCVAP00000000939	ENSCVAP00000031287	GNAS complex locus.	Guanine nucleotide binding protein (G protein), alpha transducing activity polypeptide 1.	0.470
GNAS	LOC107103230	ENSCVAP00000000939	ENSCVAP00000024627	GNAS complex locus.	GNAS complex locus.	0.900
LOC107083170	LOC107087481	ENSCVAP00000026038	ENSCVAP00000011325	Uncharacterized protein.	Guanine nucleotide binding protein (G protein), alpha transducing activity polypeptide 2.	0.427
LOC107083170	LOC107097497	ENSCVAP00000026038	ENSCVAP00000031287	Uncharacterized protein.	Guanine nucleotide binding protein (G protein), alpha transducing activity polypeptide 1.	0.427
LOC107087481	GNAS	ENSCVAP00000011325	ENSCVAP00000000939	Guanine nucleotide binding protein (G protein), alpha transducing activity polypeptide 2.	GNAS complex locus.	0.470
LOC107087481	LOC107083170	ENSCVAP00000011325	ENSCVAP00000026038	Guanine nucleotide binding protein (G protein), alpha transducing activity polypeptide 2.	Uncharacterized protein.	0.427
LOC107087481	LOC107087493	ENSCVAP00000011325	ENSCVAP00000027320	Guanine nucleotide binding protein (G protein), alpha transducing activity polypeptide 2.	Guanine nucleotide binding protein (G protein), alpha inhibiting activity polypeptide 3.	0.409
LOC107087481	LOC107095436	ENSCVAP00000011325	ENSCVAP00000027523	Guanine nucleotide binding protein (G protein), alpha transducing activity polypeptide 2.	Uncharacterized protein.	0.469
LOC107087481	LOC107097425	ENSCVAP00000011325	ENSCVAP00000020098	Guanine nucleotide binding protein (G protein), alpha transducing activity polypeptide 2.	Uncharacterized protein.	0.410
LOC107087481	LOC107097492	ENSCVAP00000011325	ENSCVAP00000031383	Guanine nucleotide binding protein (G protein), alpha transducing activity polypeptide 2.	Guanine nucleotide binding protein (G protein), alpha inhibiting activity polypeptide 2b.	0.409
LOC107087481	LOC107097497	ENSCVAP00000011325	ENSCVAP00000031287	Guanine nucleotide binding protein (G protein), alpha transducing activity polypeptide 2.	Guanine nucleotide binding protein (G protein), alpha transducing activity polypeptide 1.	0.933
LOC107087481	LOC107100929	ENSCVAP00000011325	ENSCVAP00000021979	Guanine nucleotide binding protein (G protein), alpha transducing activity polypeptide 2.	Uncharacterized protein.	0.471
LOC107087481	LOC107103230	ENSCVAP00000011325	ENSCVAP00000024627	Guanine nucleotide binding protein (G protein), alpha transducing activity polypeptide 2.	GNAS complex locus.	0.472
LOC107087481	LOC107103628	ENSCVAP00000011325	ENSCVAP00000026383	Guanine nucleotide binding protein (G protein), alpha transducing activity polypeptide 2.	Guanine nucleotide binding protein (G protein) alpha v1.	0.420
LOC107087481	LOC107103784	ENSCVAP00000011325	ENSCVAP00000004316	Guanine nucleotide binding protein (G protein), alpha transducing activity polypeptide 2.	Guanine nucleotide binding protein (G protein), alpha activating activity polypeptide O, b.	0.428
LOC107087481	LOC107104314	ENSCVAP00000011325	ENSCVAP00000005391	Guanine nucleotide binding protein (G protein), alpha transducing activity polypeptide 2.	Uncharacterized protein.	0.410
LOC107087481	LOC107105117	ENSCVAP00000011325	ENSCVAP00000020334	Guanine nucleotide binding protein (G protein), alpha transducing activity polypeptide 2.	Guanine nucleotide binding protein (G protein), alpha inhibiting activity polypeptide 2a.	0.411
LOC107087481	gnao1	ENSCVAP00000011325	ENSCVAP00000030563	Guanine nucleotide binding protein (G protein), alpha transducing activity polypeptide 2.	Uncharacterized protein.	0.429
LOC107087493	LOC107087481	ENSCVAP00000027320	ENSCVAP00000011325	Guanine nucleotide binding protein (G protein), alpha inhibiting activity polypeptide 3.	Guanine nucleotide binding protein (G protein), alpha transducing activity polypeptide 2.	0.409