9 items (Cyprinodon variegatus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSCVAP00000008657	Uncharacterized protein. (163 aa)
	tbp	TATA box binding protein. (303 aa)
	ap4b1	Adaptor related protein complex 4 subunit beta 1. (766 aa)
	LOC107101473	Alpha_adaptinC2 domain-containing protein. (841 aa)
	ENSCVAP00000007472	Coatomer subunit gamma; The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin- coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins. (785 aa)
	tbpl1	TBP-like 1. (187 aa)
	LOC107103921	AP-2 complex subunit alpha; Component of the adaptor protein complex 2 (AP-2). Adaptor protein complexes function in protein transport via transport vesicles in different membrane traffic pathways. Adaptor protein complexes are vesicle coat components and appear to be involved in cargo selection and vesicle formation. AP-2 is involved in clathrin-dependent endocytosis in which cargo proteins are incorporated into vesicles surrounded by clathrin (clathrin-coated vesicles, CCVs) which are destined for fusion with the early endosome. The clathrin lattice serves as a mechanical scaffold bu [...] (948 aa)
	ap1b1	AP complex subunit beta. (985 aa)
	LOC107090293	AP complex subunit beta. (919 aa)

Your Current Organism:

Cyprinodon variegatus

NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC107090293	LOC107101473	ENSCVAP00000028162	ENSCVAP00000023523	AP complex subunit beta.	Alpha_adaptinC2 domain-containing protein.	0.925
LOC107090293	LOC107103921	ENSCVAP00000028162	ENSCVAP00000021034	AP complex subunit beta.	AP-2 complex subunit alpha; Component of the adaptor protein complex 2 (AP-2). Adaptor protein complexes function in protein transport via transport vesicles in different membrane traffic pathways. Adaptor protein complexes are vesicle coat components and appear to be involved in cargo selection and vesicle formation. AP-2 is involved in clathrin-dependent endocytosis in which cargo proteins are incorporated into vesicles surrounded by clathrin (clathrin-coated vesicles, CCVs) which are destined for fusion with the early endosome. The clathrin lattice serves as a mechanical scaffold bu [...]	0.992
LOC107090293	ap4b1	ENSCVAP00000028162	ENSCVAP00000010734	AP complex subunit beta.	Adaptor related protein complex 4 subunit beta 1.	0.624
LOC107101473	LOC107090293	ENSCVAP00000023523	ENSCVAP00000028162	Alpha_adaptinC2 domain-containing protein.	AP complex subunit beta.	0.925
LOC107101473	LOC107103921	ENSCVAP00000023523	ENSCVAP00000021034	Alpha_adaptinC2 domain-containing protein.	AP-2 complex subunit alpha; Component of the adaptor protein complex 2 (AP-2). Adaptor protein complexes function in protein transport via transport vesicles in different membrane traffic pathways. Adaptor protein complexes are vesicle coat components and appear to be involved in cargo selection and vesicle formation. AP-2 is involved in clathrin-dependent endocytosis in which cargo proteins are incorporated into vesicles surrounded by clathrin (clathrin-coated vesicles, CCVs) which are destined for fusion with the early endosome. The clathrin lattice serves as a mechanical scaffold bu [...]	0.679
LOC107101473	ap1b1	ENSCVAP00000023523	ENSCVAP00000027396	Alpha_adaptinC2 domain-containing protein.	AP complex subunit beta.	0.925
LOC107101473	ap4b1	ENSCVAP00000023523	ENSCVAP00000010734	Alpha_adaptinC2 domain-containing protein.	Adaptor related protein complex 4 subunit beta 1.	0.919
LOC107103921	LOC107090293	ENSCVAP00000021034	ENSCVAP00000028162	AP-2 complex subunit alpha; Component of the adaptor protein complex 2 (AP-2). Adaptor protein complexes function in protein transport via transport vesicles in different membrane traffic pathways. Adaptor protein complexes are vesicle coat components and appear to be involved in cargo selection and vesicle formation. AP-2 is involved in clathrin-dependent endocytosis in which cargo proteins are incorporated into vesicles surrounded by clathrin (clathrin-coated vesicles, CCVs) which are destined for fusion with the early endosome. The clathrin lattice serves as a mechanical scaffold bu [...]	AP complex subunit beta.	0.992
LOC107103921	LOC107101473	ENSCVAP00000021034	ENSCVAP00000023523	AP-2 complex subunit alpha; Component of the adaptor protein complex 2 (AP-2). Adaptor protein complexes function in protein transport via transport vesicles in different membrane traffic pathways. Adaptor protein complexes are vesicle coat components and appear to be involved in cargo selection and vesicle formation. AP-2 is involved in clathrin-dependent endocytosis in which cargo proteins are incorporated into vesicles surrounded by clathrin (clathrin-coated vesicles, CCVs) which are destined for fusion with the early endosome. The clathrin lattice serves as a mechanical scaffold bu [...]	Alpha_adaptinC2 domain-containing protein.	0.679
LOC107103921	ap1b1	ENSCVAP00000021034	ENSCVAP00000027396	AP-2 complex subunit alpha; Component of the adaptor protein complex 2 (AP-2). Adaptor protein complexes function in protein transport via transport vesicles in different membrane traffic pathways. Adaptor protein complexes are vesicle coat components and appear to be involved in cargo selection and vesicle formation. AP-2 is involved in clathrin-dependent endocytosis in which cargo proteins are incorporated into vesicles surrounded by clathrin (clathrin-coated vesicles, CCVs) which are destined for fusion with the early endosome. The clathrin lattice serves as a mechanical scaffold bu [...]	AP complex subunit beta.	0.950
LOC107103921	ap4b1	ENSCVAP00000021034	ENSCVAP00000010734	AP-2 complex subunit alpha; Component of the adaptor protein complex 2 (AP-2). Adaptor protein complexes function in protein transport via transport vesicles in different membrane traffic pathways. Adaptor protein complexes are vesicle coat components and appear to be involved in cargo selection and vesicle formation. AP-2 is involved in clathrin-dependent endocytosis in which cargo proteins are incorporated into vesicles surrounded by clathrin (clathrin-coated vesicles, CCVs) which are destined for fusion with the early endosome. The clathrin lattice serves as a mechanical scaffold bu [...]	Adaptor related protein complex 4 subunit beta 1.	0.948
ap1b1	LOC107101473	ENSCVAP00000027396	ENSCVAP00000023523	AP complex subunit beta.	Alpha_adaptinC2 domain-containing protein.	0.925
ap1b1	LOC107103921	ENSCVAP00000027396	ENSCVAP00000021034	AP complex subunit beta.	AP-2 complex subunit alpha; Component of the adaptor protein complex 2 (AP-2). Adaptor protein complexes function in protein transport via transport vesicles in different membrane traffic pathways. Adaptor protein complexes are vesicle coat components and appear to be involved in cargo selection and vesicle formation. AP-2 is involved in clathrin-dependent endocytosis in which cargo proteins are incorporated into vesicles surrounded by clathrin (clathrin-coated vesicles, CCVs) which are destined for fusion with the early endosome. The clathrin lattice serves as a mechanical scaffold bu [...]	0.950
ap1b1	ap4b1	ENSCVAP00000027396	ENSCVAP00000010734	AP complex subunit beta.	Adaptor related protein complex 4 subunit beta 1.	0.624
ap4b1	LOC107090293	ENSCVAP00000010734	ENSCVAP00000028162	Adaptor related protein complex 4 subunit beta 1.	AP complex subunit beta.	0.624
ap4b1	LOC107101473	ENSCVAP00000010734	ENSCVAP00000023523	Adaptor related protein complex 4 subunit beta 1.	Alpha_adaptinC2 domain-containing protein.	0.919
ap4b1	LOC107103921	ENSCVAP00000010734	ENSCVAP00000021034	Adaptor related protein complex 4 subunit beta 1.	AP-2 complex subunit alpha; Component of the adaptor protein complex 2 (AP-2). Adaptor protein complexes function in protein transport via transport vesicles in different membrane traffic pathways. Adaptor protein complexes are vesicle coat components and appear to be involved in cargo selection and vesicle formation. AP-2 is involved in clathrin-dependent endocytosis in which cargo proteins are incorporated into vesicles surrounded by clathrin (clathrin-coated vesicles, CCVs) which are destined for fusion with the early endosome. The clathrin lattice serves as a mechanical scaffold bu [...]	0.948
ap4b1	ap1b1	ENSCVAP00000010734	ENSCVAP00000027396	Adaptor related protein complex 4 subunit beta 1.	AP complex subunit beta.	0.624
tbp	tbpl1	ENSCVAP00000008756	ENSCVAP00000000508	TATA box binding protein.	TBP-like 1.	0.916
tbpl1	tbp	ENSCVAP00000000508	ENSCVAP00000008756	TBP-like 1.	TATA box binding protein.	0.916