(41 nodes) Ubiquitin-associated domain network (Cyprinodon variegatus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ubap1	Ubiquitin associated protein 1. (456 aa)
	ubap2	Ubiquitin associated protein 2a. (1260 aa)
	lats2	Large tumor suppressor kinase 2. (1158 aa)
	ubap2l	Ubiquitin associated protein 2-like. (1164 aa)
	LOC107098202	Uncharacterized protein. (860 aa)
	LOC107082497	Tudor domain containing 3. (759 aa)
	ubxn1	UBX domain protein 1. (309 aa)
	LOC107088242	Uncharacterized protein; Belongs to the ubiquitin-conjugating enzyme family. (200 aa)
	LOC107085393	Si:ch73-173p19.1. (906 aa)
	ubqln4	Ubiquilin 4. (582 aa)
	LOC107092288	MAP/microtubule affinity-regulating kinase 4a. (666 aa)
	rnf31	Ring finger protein 31. (1112 aa)
	sqstm1	Sequestosome 1. (435 aa)
	Ubqln1	UBA domain-containing protein. (189 aa)
	LOC107099084	Ubiquitin-conjugating enzyme E2Kb (UBC1 homolog, yeast); Belongs to the ubiquitin-conjugating enzyme family. (200 aa)
	ubl7	Ubiquitin-like 7b (bone marrow stromal cell-derived). (368 aa)
	cbl	Cbl proto-oncogene, E3 ubiquitin protein ligase. (952 aa)
	usp13	Ubiquitin carboxyl-terminal hydrolase. (863 aa)
	LOC107101967	SNF related kinase a. (724 aa)
	mark2	Non-specific serine/threonine protein kinase. (795 aa)
	dhx57	DEAH (Asp-Glu-Ala-Asp/His) box polypeptide 57. (1419 aa)
	LOC107094871	Non-specific serine/threonine protein kinase. (763 aa)
	MARK1	Non-specific serine/threonine protein kinase. (776 aa)
	sik3	SIK family kinase 3. (1285 aa)
	LOC107104211	Salt-inducible kinase 1. (804 aa)
	sik2	Salt-inducible kinase 2b. (928 aa)
	mark3	Non-specific serine/threonine protein kinase. (760 aa)
	rad23b	RAD23 homolog B, nucleotide excision repair protein. (383 aa)
	ubac1	UBA domain containing 1. (420 aa)
	ubash3b	Ubiquitin associated and SH3 domain containing Ba. (642 aa)
	vps13d	Vacuolar protein sorting 13 homolog D. (4296 aa)
	usp5	Ubiquitin carboxyl-terminal hydrolase. (829 aa)
	huwe1	HECT, UBA and WWE domain containing E3 ubiquitin protein ligase 1. (2497 aa)
	LOC107096217	Ubiquitin associated and SH3 domain containing Bb. (518 aa)
	LOC107091165	Trinucleotide repeat containing adaptor 6C1. (1764 aa)
	LOC107087282	Ubiquitin associated protein 2b. (1169 aa)
	snrk	Uncharacterized protein. (798 aa)
	nub1	Negative regulator of ubiquitin-like proteins 1. (492 aa)
	ddi2	DNA-damage inducible protein 2. (845 aa)
	rad23a	RAD23 homolog A, nucleotide excision repair protein a. (351 aa)
	ubac2	UBA domain containing 2. (331 aa)

Your Current Organism:

Cyprinodon variegatus

NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC107088242	LOC107099084	ENSCVAP00000009671	ENSCVAP00000023618	Uncharacterized protein; Belongs to the ubiquitin-conjugating enzyme family.	Ubiquitin-conjugating enzyme E2Kb (UBC1 homolog, yeast); Belongs to the ubiquitin-conjugating enzyme family.	0.900
LOC107088242	rad23a	ENSCVAP00000009671	ENSCVAP00000016224	Uncharacterized protein; Belongs to the ubiquitin-conjugating enzyme family.	RAD23 homolog A, nucleotide excision repair protein a.	0.401
LOC107088242	rad23b	ENSCVAP00000009671	ENSCVAP00000030779	Uncharacterized protein; Belongs to the ubiquitin-conjugating enzyme family.	RAD23 homolog B, nucleotide excision repair protein.	0.401
LOC107091165	ubxn1	ENSCVAP00000021114	ENSCVAP00000010104	Trinucleotide repeat containing adaptor 6C1.	UBX domain protein 1.	0.417
LOC107098202	Ubqln1	ENSCVAP00000013317	ENSCVAP00000023122	Uncharacterized protein.	UBA domain-containing protein.	0.477
LOC107098202	cbl	ENSCVAP00000013317	ENSCVAP00000023904	Uncharacterized protein.	Cbl proto-oncogene, E3 ubiquitin protein ligase.	0.901
LOC107098202	ubl7	ENSCVAP00000013317	ENSCVAP00000023630	Uncharacterized protein.	Ubiquitin-like 7b (bone marrow stromal cell-derived).	0.477
LOC107098202	ubqln4	ENSCVAP00000013317	ENSCVAP00000006515	Uncharacterized protein.	Ubiquilin 4.	0.562
LOC107099084	LOC107088242	ENSCVAP00000023618	ENSCVAP00000009671	Ubiquitin-conjugating enzyme E2Kb (UBC1 homolog, yeast); Belongs to the ubiquitin-conjugating enzyme family.	Uncharacterized protein; Belongs to the ubiquitin-conjugating enzyme family.	0.900
LOC107099084	rad23a	ENSCVAP00000023618	ENSCVAP00000016224	Ubiquitin-conjugating enzyme E2Kb (UBC1 homolog, yeast); Belongs to the ubiquitin-conjugating enzyme family.	RAD23 homolog A, nucleotide excision repair protein a.	0.401
LOC107099084	rad23b	ENSCVAP00000023618	ENSCVAP00000030779	Ubiquitin-conjugating enzyme E2Kb (UBC1 homolog, yeast); Belongs to the ubiquitin-conjugating enzyme family.	RAD23 homolog B, nucleotide excision repair protein.	0.401
Ubqln1	LOC107098202	ENSCVAP00000023122	ENSCVAP00000013317	UBA domain-containing protein.	Uncharacterized protein.	0.477
Ubqln1	cbl	ENSCVAP00000023122	ENSCVAP00000023904	UBA domain-containing protein.	Cbl proto-oncogene, E3 ubiquitin protein ligase.	0.477
Ubqln1	ddi2	ENSCVAP00000023122	ENSCVAP00000017235	UBA domain-containing protein.	DNA-damage inducible protein 2.	0.485
Ubqln1	huwe1	ENSCVAP00000023122	ENSCVAP00000032455	UBA domain-containing protein.	HECT, UBA and WWE domain containing E3 ubiquitin protein ligase 1.	0.409
Ubqln1	nub1	ENSCVAP00000023122	ENSCVAP00000017448	UBA domain-containing protein.	Negative regulator of ubiquitin-like proteins 1.	0.536
Ubqln1	rad23a	ENSCVAP00000023122	ENSCVAP00000016224	UBA domain-containing protein.	RAD23 homolog A, nucleotide excision repair protein a.	0.656
Ubqln1	rad23b	ENSCVAP00000023122	ENSCVAP00000030779	UBA domain-containing protein.	RAD23 homolog B, nucleotide excision repair protein.	0.656
Ubqln1	sqstm1	ENSCVAP00000023122	ENSCVAP00000022201	UBA domain-containing protein.	Sequestosome 1.	0.508
Ubqln1	ubqln4	ENSCVAP00000023122	ENSCVAP00000006515	UBA domain-containing protein.	Ubiquilin 4.	0.900