(21 nodes) Small GTPase, Ras-type network (Cyprinodon variegatus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC107103249	Uncharacterized protein. (185 aa)
	ENSCVAP00000001183	RAP2B, member of RAS oncogene family. (183 aa)
	hras	HRas proto-oncogene, GTPase a. (189 aa)
	LOC107103920	RAS related. (188 aa)
	LOC107096025	Uncharacterized protein. (201 aa)
	LOC107099411	V-ral simian leukemia viral oncogene homolog Aa (ras related). (206 aa)
	LOC107104300	DIRAS family, GTP-binding RAS-like 1b. (198 aa)
	LOC107097068	RAP2C, member of RAS oncogene family. (183 aa)
	LOC107093740	RAP2A, member of RAS oncogene family b. (183 aa)
	LOC107090729	Uncharacterized protein. (207 aa)
	rap1b	Uncharacterized protein. (184 aa)
	RAP2A	RAP2A, member of RAS oncogene family. (183 aa)
	rhebl1	Ras homolog, mTORC1 binding like 1. (184 aa)
	rheb	Uncharacterized protein. (183 aa)
	LOC107095444	V-ral simian leukemia viral oncogene homolog Ba (ras related). (207 aa)
	LOC107089213	Uncharacterized protein. (199 aa)
	rras2	RAS related 2. (204 aa)
	RAP2B	Uncharacterized protein. (157 aa)
	LOC107095138	Zgc:55558. (187 aa)
	KRAS	V-Ki-ras2 Kirsten rat sarcoma viral oncogene homolog. (189 aa)
	mras	Muscle RAS oncogene homolog. (208 aa)

Your Current Organism:

Cyprinodon variegatus

NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
KRAS	LOC107090729	ENSCVAP00000004733	ENSCVAP00000017535	V-Ki-ras2 Kirsten rat sarcoma viral oncogene homolog.	Uncharacterized protein.	0.406
KRAS	LOC107095138	ENSCVAP00000004733	ENSCVAP00000004689	V-Ki-ras2 Kirsten rat sarcoma viral oncogene homolog.	Zgc:55558.	0.901
KRAS	LOC107103249	ENSCVAP00000004733	ENSCVAP00000007023	V-Ki-ras2 Kirsten rat sarcoma viral oncogene homolog.	Uncharacterized protein.	0.405
KRAS	hras	ENSCVAP00000004733	ENSCVAP00000007057	V-Ki-ras2 Kirsten rat sarcoma viral oncogene homolog.	HRas proto-oncogene, GTPase a.	0.910
KRAS	rap1b	ENSCVAP00000004733	ENSCVAP00000017552	V-Ki-ras2 Kirsten rat sarcoma viral oncogene homolog.	Uncharacterized protein.	0.406
LOC107090729	KRAS	ENSCVAP00000017535	ENSCVAP00000004733	Uncharacterized protein.	V-Ki-ras2 Kirsten rat sarcoma viral oncogene homolog.	0.406
LOC107090729	LOC107095138	ENSCVAP00000017535	ENSCVAP00000004689	Uncharacterized protein.	Zgc:55558.	0.407
LOC107090729	LOC107095444	ENSCVAP00000017535	ENSCVAP00000027151	Uncharacterized protein.	V-ral simian leukemia viral oncogene homolog Ba (ras related).	0.414
LOC107090729	LOC107096025	ENSCVAP00000017535	ENSCVAP00000011372	Uncharacterized protein.	Uncharacterized protein.	0.415
LOC107090729	LOC107099411	ENSCVAP00000017535	ENSCVAP00000029071	Uncharacterized protein.	V-ral simian leukemia viral oncogene homolog Aa (ras related).	0.413
LOC107090729	LOC107103249	ENSCVAP00000017535	ENSCVAP00000007023	Uncharacterized protein.	Uncharacterized protein.	0.900
LOC107090729	hras	ENSCVAP00000017535	ENSCVAP00000007057	Uncharacterized protein.	HRas proto-oncogene, GTPase a.	0.407
LOC107090729	rap1b	ENSCVAP00000017535	ENSCVAP00000017552	Uncharacterized protein.	Uncharacterized protein.	0.900
LOC107095138	KRAS	ENSCVAP00000004689	ENSCVAP00000004733	Zgc:55558.	V-Ki-ras2 Kirsten rat sarcoma viral oncogene homolog.	0.901
LOC107095138	LOC107090729	ENSCVAP00000004689	ENSCVAP00000017535	Zgc:55558.	Uncharacterized protein.	0.407
LOC107095138	LOC107103249	ENSCVAP00000004689	ENSCVAP00000007023	Zgc:55558.	Uncharacterized protein.	0.406
LOC107095138	hras	ENSCVAP00000004689	ENSCVAP00000007057	Zgc:55558.	HRas proto-oncogene, GTPase a.	0.910
LOC107095138	rap1b	ENSCVAP00000004689	ENSCVAP00000017552	Zgc:55558.	Uncharacterized protein.	0.407
LOC107095444	LOC107090729	ENSCVAP00000027151	ENSCVAP00000017535	V-ral simian leukemia viral oncogene homolog Ba (ras related).	Uncharacterized protein.	0.414
LOC107095444	LOC107103249	ENSCVAP00000027151	ENSCVAP00000007023	V-ral simian leukemia viral oncogene homolog Ba (ras related).	Uncharacterized protein.	0.412