12 items (Cyprinodon variegatus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC107098447	Uncharacterized protein. (576 aa)
	acss3	Acyl-CoA synthetase short chain family member 3. (701 aa)
	LOC107089440	Acetyl-coenzyme A synthetase. (673 aa)
	acss2	Acyl-CoA synthetase short chain family member 2. (698 aa)
	acsl5	Acyl-CoA synthetase long chain family member 5. (683 aa)
	slc27a2	Solute carrier family 27 member 2a. (615 aa)
	slc27a4	Solute carrier family 27 member 4. (643 aa)
	acsl3	Uncharacterized protein. (766 aa)
	acss1	Acetyl-coenzyme A synthetase. (680 aa)
	LOC107102464	Acyl-CoA synthetase family member 2. (609 aa)
	slc27a6	Solute carrier family 27 member 6. (631 aa)
	ACSF3	Acyl-CoA synthetase family member 3. (588 aa)

Your Current Organism:

Cyprinodon variegatus

NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ACSF3	LOC107089440	ENSCVAP00000028520	ENSCVAP00000002508	Acyl-CoA synthetase family member 3.	Acetyl-coenzyme A synthetase.	0.533
ACSF3	acss1	ENSCVAP00000028520	ENSCVAP00000019293	Acyl-CoA synthetase family member 3.	Acetyl-coenzyme A synthetase.	0.533
ACSF3	acss2	ENSCVAP00000028520	ENSCVAP00000005532	Acyl-CoA synthetase family member 3.	Acyl-CoA synthetase short chain family member 2.	0.533
ACSF3	acss3	ENSCVAP00000028520	ENSCVAP00000029021	Acyl-CoA synthetase family member 3.	Acyl-CoA synthetase short chain family member 3.	0.533
LOC107089440	ACSF3	ENSCVAP00000002508	ENSCVAP00000028520	Acetyl-coenzyme A synthetase.	Acyl-CoA synthetase family member 3.	0.533
LOC107089440	LOC107098447	ENSCVAP00000002508	ENSCVAP00000002105	Acetyl-coenzyme A synthetase.	Uncharacterized protein.	0.534
LOC107089440	LOC107102464	ENSCVAP00000002508	ENSCVAP00000025539	Acetyl-coenzyme A synthetase.	Acyl-CoA synthetase family member 2.	0.534
LOC107089440	acss1	ENSCVAP00000002508	ENSCVAP00000019293	Acetyl-coenzyme A synthetase.	Acetyl-coenzyme A synthetase.	0.904
LOC107089440	acss2	ENSCVAP00000002508	ENSCVAP00000005532	Acetyl-coenzyme A synthetase.	Acyl-CoA synthetase short chain family member 2.	0.901
LOC107089440	acss3	ENSCVAP00000002508	ENSCVAP00000029021	Acetyl-coenzyme A synthetase.	Acyl-CoA synthetase short chain family member 3.	0.909
LOC107098447	LOC107089440	ENSCVAP00000002105	ENSCVAP00000002508	Uncharacterized protein.	Acetyl-coenzyme A synthetase.	0.534
LOC107098447	acss1	ENSCVAP00000002105	ENSCVAP00000019293	Uncharacterized protein.	Acetyl-coenzyme A synthetase.	0.534
LOC107098447	acss2	ENSCVAP00000002105	ENSCVAP00000005532	Uncharacterized protein.	Acyl-CoA synthetase short chain family member 2.	0.534
LOC107098447	acss3	ENSCVAP00000002105	ENSCVAP00000029021	Uncharacterized protein.	Acyl-CoA synthetase short chain family member 3.	0.534
LOC107102464	LOC107089440	ENSCVAP00000025539	ENSCVAP00000002508	Acyl-CoA synthetase family member 2.	Acetyl-coenzyme A synthetase.	0.534
LOC107102464	acss1	ENSCVAP00000025539	ENSCVAP00000019293	Acyl-CoA synthetase family member 2.	Acetyl-coenzyme A synthetase.	0.534
LOC107102464	acss2	ENSCVAP00000025539	ENSCVAP00000005532	Acyl-CoA synthetase family member 2.	Acyl-CoA synthetase short chain family member 2.	0.534
LOC107102464	acss3	ENSCVAP00000025539	ENSCVAP00000029021	Acyl-CoA synthetase family member 2.	Acyl-CoA synthetase short chain family member 3.	0.534
acsl3	acsl5	ENSCVAP00000015200	ENSCVAP00000005842	Uncharacterized protein.	Acyl-CoA synthetase long chain family member 5.	0.753
acsl5	acsl3	ENSCVAP00000005842	ENSCVAP00000015200	Acyl-CoA synthetase long chain family member 5.	Uncharacterized protein.	0.753