(11 nodes) TCP-1-like chaperonin intermediate domain superfamily network (Cyprinodon variegatus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	cct6a	Chaperonin containing TCP1, subunit 6A (zeta 1). (448 aa)
	tcp1	T-complex 1. (558 aa)
	cct5	Chaperonin containing TCP1, subunit 5 (epsilon). (541 aa)
	cct7	T-complex protein 1 subunit eta; Molecular chaperone; assists the folding of proteins upon ATP hydrolysis. Known to play a role, in vitro, in the folding of actin and tubulin. (546 aa)
	mkks	McKusick-Kaufman syndrome. (564 aa)
	cct4	T-complex protein 1 subunit delta. (532 aa)
	cct2	Chaperonin containing TCP1, subunit 2 (beta). (533 aa)
	bbs12	Bardet-Biedl syndrome 12. (614 aa)
	cct3	T-complex protein 1 subunit gamma. (540 aa)
	hspd1	Heat shock 60 protein 1; Belongs to the chaperonin (HSP60) family. (575 aa)
	cct8	Chaperonin containing TCP1, subunit 8 (theta). (558 aa)

Your Current Organism:

Cyprinodon variegatus

NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
bbs12	cct2	ENSCVAP00000018995	ENSCVAP00000017170	Bardet-Biedl syndrome 12.	Chaperonin containing TCP1, subunit 2 (beta).	0.591
bbs12	cct3	ENSCVAP00000018995	ENSCVAP00000019806	Bardet-Biedl syndrome 12.	T-complex protein 1 subunit gamma.	0.591
bbs12	cct4	ENSCVAP00000018995	ENSCVAP00000014028	Bardet-Biedl syndrome 12.	T-complex protein 1 subunit delta.	0.591
bbs12	cct5	ENSCVAP00000018995	ENSCVAP00000005016	Bardet-Biedl syndrome 12.	Chaperonin containing TCP1, subunit 5 (epsilon).	0.591
bbs12	cct6a	ENSCVAP00000018995	ENSCVAP00000004734	Bardet-Biedl syndrome 12.	Chaperonin containing TCP1, subunit 6A (zeta 1).	0.406
bbs12	cct8	ENSCVAP00000018995	ENSCVAP00000022780	Bardet-Biedl syndrome 12.	Chaperonin containing TCP1, subunit 8 (theta).	0.642
bbs12	mkks	ENSCVAP00000018995	ENSCVAP00000013259	Bardet-Biedl syndrome 12.	McKusick-Kaufman syndrome.	0.826
bbs12	tcp1	ENSCVAP00000018995	ENSCVAP00000000820	Bardet-Biedl syndrome 12.	T-complex 1.	0.747
cct2	bbs12	ENSCVAP00000017170	ENSCVAP00000018995	Chaperonin containing TCP1, subunit 2 (beta).	Bardet-Biedl syndrome 12.	0.591
cct2	cct3	ENSCVAP00000017170	ENSCVAP00000019806	Chaperonin containing TCP1, subunit 2 (beta).	T-complex protein 1 subunit gamma.	0.999
cct2	cct4	ENSCVAP00000017170	ENSCVAP00000014028	Chaperonin containing TCP1, subunit 2 (beta).	T-complex protein 1 subunit delta.	0.999
cct2	cct5	ENSCVAP00000017170	ENSCVAP00000005016	Chaperonin containing TCP1, subunit 2 (beta).	Chaperonin containing TCP1, subunit 5 (epsilon).	0.999
cct2	cct6a	ENSCVAP00000017170	ENSCVAP00000004734	Chaperonin containing TCP1, subunit 2 (beta).	Chaperonin containing TCP1, subunit 6A (zeta 1).	0.999
cct2	cct7	ENSCVAP00000017170	ENSCVAP00000006627	Chaperonin containing TCP1, subunit 2 (beta).	T-complex protein 1 subunit eta; Molecular chaperone; assists the folding of proteins upon ATP hydrolysis. Known to play a role, in vitro, in the folding of actin and tubulin.	0.999
cct2	cct8	ENSCVAP00000017170	ENSCVAP00000022780	Chaperonin containing TCP1, subunit 2 (beta).	Chaperonin containing TCP1, subunit 8 (theta).	0.999
cct2	hspd1	ENSCVAP00000017170	ENSCVAP00000021521	Chaperonin containing TCP1, subunit 2 (beta).	Heat shock 60 protein 1; Belongs to the chaperonin (HSP60) family.	0.611
cct2	mkks	ENSCVAP00000017170	ENSCVAP00000013259	Chaperonin containing TCP1, subunit 2 (beta).	McKusick-Kaufman syndrome.	0.985
cct2	tcp1	ENSCVAP00000017170	ENSCVAP00000000820	Chaperonin containing TCP1, subunit 2 (beta).	T-complex 1.	0.999
cct3	bbs12	ENSCVAP00000019806	ENSCVAP00000018995	T-complex protein 1 subunit gamma.	Bardet-Biedl syndrome 12.	0.591
cct3	cct2	ENSCVAP00000019806	ENSCVAP00000017170	T-complex protein 1 subunit gamma.	Chaperonin containing TCP1, subunit 2 (beta).	0.999