(24 nodes) Extended PHD (ePHD) domain network (Cyprinodon variegatus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC107095333	PHD-type domain-containing protein. (265 aa)
	LOC107093321	Lysine (K)-specific demethylase 4B. (1222 aa)
	brd1	Bromodomain containing 1a. (1204 aa)
	tcf20	Transcription factor 20. (2399 aa)
	BRD1	Bromodomain containing 1. (1070 aa)
	jade1	Jade family PHD finger 1. (912 aa)
	ENSCVAP00000005575	G2/M-phase specific E3 ubiquitin protein ligase. (648 aa)
	mllt10	MLLT10 histone lysine methyltransferase DOT1L cofactor. (1056 aa)
	mllt6	MLLT6, PHD finger containing. (1071 aa)
	phf14	PHD finger protein 14. (864 aa)
	jade3	Jade family PHD finger 3. (779 aa)
	brpf1	Uncharacterized protein. (1279 aa)
	LOC107101115	Lysine (K)-specific methyltransferase 2Ba. (2574 aa)
	KMT2A	Histone-lysine N-methyltransferase; Belongs to the class V-like SAM-binding methyltransferase superfamily. Histone-lysine methyltransferase family. TRX/MLL subfamily. (4453 aa)
	LOC107089342	Bromodomain and PHD finger containing, 3a. (1236 aa)
	kmt2b	Lysine (K)-specific methyltransferase 2Bb. (3841 aa)
	LOC107092834	Retinoic acid induced 1. (2205 aa)
	LOC107086721	Bromodomain and PHD finger containing, 3b. (1245 aa)
	Kmt2c	Uncharacterized protein. (464 aa)
	ENSCVAP00000019599	Jade family PHD finger 2. (447 aa)
	ENSCVAP00000018590	Uncharacterized protein. (362 aa)
	kdm4c	Lysine (K)-specific demethylase 4C. (1534 aa)
	kdm4a	PHD-type domain-containing protein. (292 aa)
	phf6	PHD finger protein 6. (363 aa)

Your Current Organism:

Cyprinodon variegatus

NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BRD1	LOC107086721	ENSCVAP00000003206	ENSCVAP00000020206	Bromodomain containing 1.	Bromodomain and PHD finger containing, 3b.	0.560
BRD1	LOC107089342	ENSCVAP00000003206	ENSCVAP00000023262	Bromodomain containing 1.	Bromodomain and PHD finger containing, 3a.	0.558
ENSCVAP00000018590	KMT2A	ENSCVAP00000018590	ENSCVAP00000023952	Uncharacterized protein.	Histone-lysine N-methyltransferase; Belongs to the class V-like SAM-binding methyltransferase superfamily. Histone-lysine methyltransferase family. TRX/MLL subfamily.	0.485
ENSCVAP00000018590	LOC107101115	ENSCVAP00000018590	ENSCVAP00000030257	Uncharacterized protein.	Lysine (K)-specific methyltransferase 2Ba.	0.485
ENSCVAP00000018590	kmt2b	ENSCVAP00000018590	ENSCVAP00000022694	Uncharacterized protein.	Lysine (K)-specific methyltransferase 2Bb.	0.485
KMT2A	ENSCVAP00000018590	ENSCVAP00000023952	ENSCVAP00000018590	Histone-lysine N-methyltransferase; Belongs to the class V-like SAM-binding methyltransferase superfamily. Histone-lysine methyltransferase family. TRX/MLL subfamily.	Uncharacterized protein.	0.485
KMT2A	Kmt2c	ENSCVAP00000023952	ENSCVAP00000019625	Histone-lysine N-methyltransferase; Belongs to the class V-like SAM-binding methyltransferase superfamily. Histone-lysine methyltransferase family. TRX/MLL subfamily.	Uncharacterized protein.	0.485
Kmt2c	KMT2A	ENSCVAP00000019625	ENSCVAP00000023952	Uncharacterized protein.	Histone-lysine N-methyltransferase; Belongs to the class V-like SAM-binding methyltransferase superfamily. Histone-lysine methyltransferase family. TRX/MLL subfamily.	0.485
Kmt2c	LOC107101115	ENSCVAP00000019625	ENSCVAP00000030257	Uncharacterized protein.	Lysine (K)-specific methyltransferase 2Ba.	0.485
Kmt2c	kmt2b	ENSCVAP00000019625	ENSCVAP00000022694	Uncharacterized protein.	Lysine (K)-specific methyltransferase 2Bb.	0.485
LOC107086721	BRD1	ENSCVAP00000020206	ENSCVAP00000003206	Bromodomain and PHD finger containing, 3b.	Bromodomain containing 1.	0.560
LOC107086721	brd1	ENSCVAP00000020206	ENSCVAP00000001984	Bromodomain and PHD finger containing, 3b.	Bromodomain containing 1a.	0.554
LOC107086721	brpf1	ENSCVAP00000020206	ENSCVAP00000013056	Bromodomain and PHD finger containing, 3b.	Uncharacterized protein.	0.553
LOC107089342	BRD1	ENSCVAP00000023262	ENSCVAP00000003206	Bromodomain and PHD finger containing, 3a.	Bromodomain containing 1.	0.558
LOC107089342	brd1	ENSCVAP00000023262	ENSCVAP00000001984	Bromodomain and PHD finger containing, 3a.	Bromodomain containing 1a.	0.555
LOC107089342	brpf1	ENSCVAP00000023262	ENSCVAP00000013056	Bromodomain and PHD finger containing, 3a.	Uncharacterized protein.	0.553
LOC107101115	ENSCVAP00000018590	ENSCVAP00000030257	ENSCVAP00000018590	Lysine (K)-specific methyltransferase 2Ba.	Uncharacterized protein.	0.485
LOC107101115	Kmt2c	ENSCVAP00000030257	ENSCVAP00000019625	Lysine (K)-specific methyltransferase 2Ba.	Uncharacterized protein.	0.485
brd1	LOC107086721	ENSCVAP00000001984	ENSCVAP00000020206	Bromodomain containing 1a.	Bromodomain and PHD finger containing, 3b.	0.554
brd1	LOC107089342	ENSCVAP00000001984	ENSCVAP00000023262	Bromodomain containing 1a.	Bromodomain and PHD finger containing, 3a.	0.555