24 items (Cyprinodon variegatus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Zranb2	RanBP2-type domain-containing protein. (93 aa)
	ewsr1	EWS RNA-binding protein 1b. (602 aa)
	ranbp2	RAN binding protein 2. (3248 aa)
	LOC107091355	Zinc finger, RAN-binding domain containing 1b. (757 aa)
	rybp	RING1 and YY1 binding protein b. (268 aa)
	nploc4	NPL4 homolog, ubiquitin recognition factor. (628 aa)
	yaf2	YY1 associated factor 2. (191 aa)
	tab2	TGF-beta activated kinase 1 (MAP3K7) binding protein 2. (752 aa)
	capn15	Calpain 15; Belongs to the peptidase C2 family. (1208 aa)
	zranb3	Zinc finger, RAN-binding domain containing 3. (703 aa)
	rbck1	RanBP-type and C3HC4-type zinc finger containing 1. (516 aa)
	YAF2	YY1 associated factor 2. (181 aa)
	rnf31	Ring finger protein 31. (1112 aa)
	LOC107087042	RNA binding motif protein 10. (906 aa)
	LOC107103138	TAF15 RNA polymerase II, TATA box binding protein (TBP)-associated factor. (478 aa)
	mdm4	MDM4 regulator of p53; Belongs to the MDM2/MDM4 family. (459 aa)
	neil3	Nei-like DNA glycosylase 3. (580 aa)
	rbm5	RNA binding motif protein 5. (848 aa)
	sharpin	SHANK-associated RH domain interacting protein. (435 aa)
	mdm2	MDM2 proto-oncogene; Belongs to the MDM2/MDM4 family. (482 aa)
	LOC107092260	Sharpin and rbck1 related. (707 aa)
	zranb1	Uncharacterized protein. (707 aa)
	tab3	TGF-beta activated kinase 1 (MAP3K7) binding protein 3. (598 aa)
	nup153	Nucleoporin 153. (1409 aa)

Your Current Organism:

Cyprinodon variegatus

NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC107087042	LOC107103138	ENSCVAP00000007848	ENSCVAP00000006760	RNA binding motif protein 10.	TAF15 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	0.505
LOC107087042	ewsr1	ENSCVAP00000007848	ENSCVAP00000011547	RNA binding motif protein 10.	EWS RNA-binding protein 1b.	0.516
LOC107091355	nploc4	ENSCVAP00000016583	ENSCVAP00000017847	Zinc finger, RAN-binding domain containing 1b.	NPL4 homolog, ubiquitin recognition factor.	0.484
LOC107092260	rbck1	ENSCVAP00000023706	ENSCVAP00000020932	Sharpin and rbck1 related.	RanBP-type and C3HC4-type zinc finger containing 1.	0.903
LOC107092260	rnf31	ENSCVAP00000023706	ENSCVAP00000021898	Sharpin and rbck1 related.	Ring finger protein 31.	0.992
LOC107092260	sharpin	ENSCVAP00000023706	ENSCVAP00000023328	Sharpin and rbck1 related.	SHANK-associated RH domain interacting protein.	0.997
LOC107092260	tab2	ENSCVAP00000023706	ENSCVAP00000020013	Sharpin and rbck1 related.	TGF-beta activated kinase 1 (MAP3K7) binding protein 2.	0.448
LOC107092260	tab3	ENSCVAP00000023706	ENSCVAP00000031343	Sharpin and rbck1 related.	TGF-beta activated kinase 1 (MAP3K7) binding protein 3.	0.537
LOC107103138	LOC107087042	ENSCVAP00000006760	ENSCVAP00000007848	TAF15 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	RNA binding motif protein 10.	0.505
LOC107103138	ewsr1	ENSCVAP00000006760	ENSCVAP00000011547	TAF15 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	EWS RNA-binding protein 1b.	0.623
LOC107103138	rbm5	ENSCVAP00000006760	ENSCVAP00000022760	TAF15 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	RNA binding motif protein 5.	0.505
ewsr1	LOC107087042	ENSCVAP00000011547	ENSCVAP00000007848	EWS RNA-binding protein 1b.	RNA binding motif protein 10.	0.516
ewsr1	LOC107103138	ENSCVAP00000011547	ENSCVAP00000006760	EWS RNA-binding protein 1b.	TAF15 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	0.623
ewsr1	rbm5	ENSCVAP00000011547	ENSCVAP00000022760	EWS RNA-binding protein 1b.	RNA binding motif protein 5.	0.516
mdm2	mdm4	ENSCVAP00000023426	ENSCVAP00000004343	MDM2 proto-oncogene; Belongs to the MDM2/MDM4 family.	MDM4 regulator of p53; Belongs to the MDM2/MDM4 family.	0.998
mdm2	ranbp2	ENSCVAP00000023426	ENSCVAP00000013540	MDM2 proto-oncogene; Belongs to the MDM2/MDM4 family.	RAN binding protein 2.	0.521
mdm4	mdm2	ENSCVAP00000004343	ENSCVAP00000023426	MDM4 regulator of p53; Belongs to the MDM2/MDM4 family.	MDM2 proto-oncogene; Belongs to the MDM2/MDM4 family.	0.998
mdm4	ranbp2	ENSCVAP00000004343	ENSCVAP00000013540	MDM4 regulator of p53; Belongs to the MDM2/MDM4 family.	RAN binding protein 2.	0.494
nploc4	LOC107091355	ENSCVAP00000017847	ENSCVAP00000016583	NPL4 homolog, ubiquitin recognition factor.	Zinc finger, RAN-binding domain containing 1b.	0.484
nploc4	zranb1	ENSCVAP00000017847	ENSCVAP00000029329	NPL4 homolog, ubiquitin recognition factor.	Uncharacterized protein.	0.484