8 items (Cyprinodon variegatus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	mef2c	Myocyte enhancer factor 2cb. (526 aa)
	LOC107090582	MADS-box domain-containing protein. (464 aa)
	mef2a	Myocyte enhancer factor 2aa. (528 aa)
	LOC107082632	MADS-box domain-containing protein. (489 aa)
	LOC107101124	MADS-box domain-containing protein. (569 aa)
	mef2b	Myocyte enhancer factor 2b. (387 aa)
	mef2d	Myocyte enhancer factor 2d. (580 aa)
	srf	MADS-box domain-containing protein. (596 aa)

Your Current Organism:

Cyprinodon variegatus

NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC107082632	LOC107101124	ENSCVAP00000023494	ENSCVAP00000015703	MADS-box domain-containing protein.	MADS-box domain-containing protein.	0.509
LOC107082632	mef2d	ENSCVAP00000023494	ENSCVAP00000030755	MADS-box domain-containing protein.	Myocyte enhancer factor 2d.	0.509
LOC107082632	srf	ENSCVAP00000023494	ENSCVAP00000015112	MADS-box domain-containing protein.	MADS-box domain-containing protein.	0.902
LOC107090582	mef2c	ENSCVAP00000002572	ENSCVAP00000031925	MADS-box domain-containing protein.	Myocyte enhancer factor 2cb.	0.902
LOC107101124	LOC107082632	ENSCVAP00000015703	ENSCVAP00000023494	MADS-box domain-containing protein.	MADS-box domain-containing protein.	0.509
LOC107101124	mef2a	ENSCVAP00000015703	ENSCVAP00000020854	MADS-box domain-containing protein.	Myocyte enhancer factor 2aa.	0.596
LOC107101124	mef2b	ENSCVAP00000015703	ENSCVAP00000024064	MADS-box domain-containing protein.	Myocyte enhancer factor 2b.	0.745
LOC107101124	mef2c	ENSCVAP00000015703	ENSCVAP00000031925	MADS-box domain-containing protein.	Myocyte enhancer factor 2cb.	0.607
LOC107101124	srf	ENSCVAP00000015703	ENSCVAP00000015112	MADS-box domain-containing protein.	MADS-box domain-containing protein.	0.509
mef2a	LOC107101124	ENSCVAP00000020854	ENSCVAP00000015703	Myocyte enhancer factor 2aa.	MADS-box domain-containing protein.	0.596
mef2a	mef2b	ENSCVAP00000020854	ENSCVAP00000024064	Myocyte enhancer factor 2aa.	Myocyte enhancer factor 2b.	0.665
mef2a	mef2d	ENSCVAP00000020854	ENSCVAP00000030755	Myocyte enhancer factor 2aa.	Myocyte enhancer factor 2d.	0.596
mef2b	LOC107101124	ENSCVAP00000024064	ENSCVAP00000015703	Myocyte enhancer factor 2b.	MADS-box domain-containing protein.	0.745
mef2b	mef2a	ENSCVAP00000024064	ENSCVAP00000020854	Myocyte enhancer factor 2b.	Myocyte enhancer factor 2aa.	0.665
mef2b	mef2c	ENSCVAP00000024064	ENSCVAP00000031925	Myocyte enhancer factor 2b.	Myocyte enhancer factor 2cb.	0.665
mef2b	mef2d	ENSCVAP00000024064	ENSCVAP00000030755	Myocyte enhancer factor 2b.	Myocyte enhancer factor 2d.	0.745
mef2c	LOC107090582	ENSCVAP00000031925	ENSCVAP00000002572	Myocyte enhancer factor 2cb.	MADS-box domain-containing protein.	0.902
mef2c	LOC107101124	ENSCVAP00000031925	ENSCVAP00000015703	Myocyte enhancer factor 2cb.	MADS-box domain-containing protein.	0.607
mef2c	mef2b	ENSCVAP00000031925	ENSCVAP00000024064	Myocyte enhancer factor 2cb.	Myocyte enhancer factor 2b.	0.665
mef2c	mef2d	ENSCVAP00000031925	ENSCVAP00000030755	Myocyte enhancer factor 2cb.	Myocyte enhancer factor 2d.	0.599