(13 nodes) Rel homology domain (RHD), DNA-binding domain superfamily network (Cyprinodon variegatus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	relb	V-rel avian reticuloendotheliosis viral oncogene homolog B. (564 aa)
	nfkb2	Nuclear factor of kappa light polypeptide gene enhancer in B-cells 2 (p49/p100). (773 aa)
	nfatc3	Nuclear factor of activated T cells 3a. (1102 aa)
	nfatc2	Nuclear factor of activated T cells 2a. (897 aa)
	LOC107097099	RHD domain-containing protein. (869 aa)
	LOC107090209	Nuclear factor of activated T cells 5b. (1344 aa)
	rela	V-rel avian reticuloendotheliosis viral oncogene homolog A. (622 aa)
	REL	REL proto-oncogene, NF-kB subunit. (630 aa)
	LOC107089923	RHD domain-containing protein. (689 aa)
	nfkb1	Nuclear factor of kappa light polypeptide gene enhancer in B-cells 1. (893 aa)
	LOC107099230	Nuclear factor of activated T cells 3b. (860 aa)
	LOC107103978	Nuclear factor of activated T cells 5a. (1426 aa)
	LOC107090832	Nuclear factor of activated T cells 1. (876 aa)

Your Current Organism:

Cyprinodon variegatus

NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC107089923	LOC107099230	ENSCVAP00000007967	ENSCVAP00000018763	RHD domain-containing protein.	Nuclear factor of activated T cells 3b.	0.504
LOC107089923	nfatc2	ENSCVAP00000007967	ENSCVAP00000025704	RHD domain-containing protein.	Nuclear factor of activated T cells 2a.	0.661
LOC107089923	nfatc3	ENSCVAP00000007967	ENSCVAP00000021771	RHD domain-containing protein.	Nuclear factor of activated T cells 3a.	0.483
LOC107090832	LOC107099230	ENSCVAP00000014112	ENSCVAP00000018763	Nuclear factor of activated T cells 1.	Nuclear factor of activated T cells 3b.	0.469
LOC107090832	nfatc2	ENSCVAP00000014112	ENSCVAP00000025704	Nuclear factor of activated T cells 1.	Nuclear factor of activated T cells 2a.	0.651
LOC107090832	nfatc3	ENSCVAP00000014112	ENSCVAP00000021771	Nuclear factor of activated T cells 1.	Nuclear factor of activated T cells 3a.	0.469
LOC107097099	nfatc2	ENSCVAP00000026906	ENSCVAP00000025704	RHD domain-containing protein.	Nuclear factor of activated T cells 2a.	0.902
LOC107099230	LOC107089923	ENSCVAP00000018763	ENSCVAP00000007967	Nuclear factor of activated T cells 3b.	RHD domain-containing protein.	0.504
LOC107099230	LOC107090832	ENSCVAP00000018763	ENSCVAP00000014112	Nuclear factor of activated T cells 3b.	Nuclear factor of activated T cells 1.	0.469
LOC107099230	nfatc2	ENSCVAP00000018763	ENSCVAP00000025704	Nuclear factor of activated T cells 3b.	Nuclear factor of activated T cells 2a.	0.537
LOC107099230	nfatc3	ENSCVAP00000018763	ENSCVAP00000021771	Nuclear factor of activated T cells 3b.	Nuclear factor of activated T cells 3a.	0.903
REL	nfkb1	ENSCVAP00000014054	ENSCVAP00000006220	REL proto-oncogene, NF-kB subunit.	Nuclear factor of kappa light polypeptide gene enhancer in B-cells 1.	0.812
REL	nfkb2	ENSCVAP00000014054	ENSCVAP00000003257	REL proto-oncogene, NF-kB subunit.	Nuclear factor of kappa light polypeptide gene enhancer in B-cells 2 (p49/p100).	0.811
REL	relb	ENSCVAP00000014054	ENSCVAP00000003872	REL proto-oncogene, NF-kB subunit.	V-rel avian reticuloendotheliosis viral oncogene homolog B.	0.713
nfatc2	LOC107089923	ENSCVAP00000025704	ENSCVAP00000007967	Nuclear factor of activated T cells 2a.	RHD domain-containing protein.	0.661
nfatc2	LOC107090832	ENSCVAP00000025704	ENSCVAP00000014112	Nuclear factor of activated T cells 2a.	Nuclear factor of activated T cells 1.	0.651
nfatc2	LOC107097099	ENSCVAP00000025704	ENSCVAP00000026906	Nuclear factor of activated T cells 2a.	RHD domain-containing protein.	0.902
nfatc2	LOC107099230	ENSCVAP00000025704	ENSCVAP00000018763	Nuclear factor of activated T cells 2a.	Nuclear factor of activated T cells 3b.	0.537
nfatc2	nfatc3	ENSCVAP00000025704	ENSCVAP00000021771	Nuclear factor of activated T cells 2a.	Nuclear factor of activated T cells 3a.	0.537
nfatc3	LOC107089923	ENSCVAP00000021771	ENSCVAP00000007967	Nuclear factor of activated T cells 3a.	RHD domain-containing protein.	0.483