(11 nodes) VPS9 domain superfamily network (Cyprinodon variegatus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC107098980	Ras and Rab interactor 2. (1020 aa)
	gapvd1	GTPase activating protein and VPS9 domains 1. (1485 aa)
	Rin1	VPS9 domain-containing protein. (404 aa)
	LOC107083525	Uncharacterized protein. (1486 aa)
	LOC107094621	Uncharacterized protein. (967 aa)
	LOC107100056	VPS9 domain-containing protein. (787 aa)
	LOC107098757	VPS9 domain-containing protein. (993 aa)
	vps9d1	VPS9 domain containing 1. (673 aa)
	psmd9	Uncharacterized protein. (475 aa)
	LOC107081922	RAB guanine nucleotide exchange factor (GEF) 1, like. (505 aa)
	rabgef1	RAB guanine nucleotide exchange factor (GEF) 1. (504 aa)

Your Current Organism:

Cyprinodon variegatus

NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC107081922	LOC107083525	ENSCVAP00000003317	ENSCVAP00000013227	RAB guanine nucleotide exchange factor (GEF) 1, like.	Uncharacterized protein.	0.968
LOC107081922	LOC107094621	ENSCVAP00000003317	ENSCVAP00000001339	RAB guanine nucleotide exchange factor (GEF) 1, like.	Uncharacterized protein.	0.643
LOC107081922	LOC107098757	ENSCVAP00000003317	ENSCVAP00000029141	RAB guanine nucleotide exchange factor (GEF) 1, like.	VPS9 domain-containing protein.	0.643
LOC107081922	LOC107098980	ENSCVAP00000003317	ENSCVAP00000008034	RAB guanine nucleotide exchange factor (GEF) 1, like.	Ras and Rab interactor 2.	0.643
LOC107081922	LOC107100056	ENSCVAP00000003317	ENSCVAP00000025789	RAB guanine nucleotide exchange factor (GEF) 1, like.	VPS9 domain-containing protein.	0.643
LOC107081922	Rin1	ENSCVAP00000003317	ENSCVAP00000011551	RAB guanine nucleotide exchange factor (GEF) 1, like.	VPS9 domain-containing protein.	0.677
LOC107081922	gapvd1	ENSCVAP00000003317	ENSCVAP00000011353	RAB guanine nucleotide exchange factor (GEF) 1, like.	GTPase activating protein and VPS9 domains 1.	0.588
LOC107081922	psmd9	ENSCVAP00000003317	ENSCVAP00000020538	RAB guanine nucleotide exchange factor (GEF) 1, like.	Uncharacterized protein.	0.592
LOC107081922	rabgef1	ENSCVAP00000003317	ENSCVAP00000004032	RAB guanine nucleotide exchange factor (GEF) 1, like.	RAB guanine nucleotide exchange factor (GEF) 1.	0.571
LOC107083525	LOC107081922	ENSCVAP00000013227	ENSCVAP00000003317	Uncharacterized protein.	RAB guanine nucleotide exchange factor (GEF) 1, like.	0.968
LOC107083525	LOC107094621	ENSCVAP00000013227	ENSCVAP00000001339	Uncharacterized protein.	Uncharacterized protein.	0.471
LOC107083525	LOC107098757	ENSCVAP00000013227	ENSCVAP00000029141	Uncharacterized protein.	VPS9 domain-containing protein.	0.561
LOC107083525	LOC107098980	ENSCVAP00000013227	ENSCVAP00000008034	Uncharacterized protein.	Ras and Rab interactor 2.	0.471
LOC107083525	LOC107100056	ENSCVAP00000013227	ENSCVAP00000025789	Uncharacterized protein.	VPS9 domain-containing protein.	0.471
LOC107083525	Rin1	ENSCVAP00000013227	ENSCVAP00000011551	Uncharacterized protein.	VPS9 domain-containing protein.	0.547
LOC107083525	gapvd1	ENSCVAP00000013227	ENSCVAP00000011353	Uncharacterized protein.	GTPase activating protein and VPS9 domains 1.	0.683
LOC107083525	psmd9	ENSCVAP00000013227	ENSCVAP00000020538	Uncharacterized protein.	Uncharacterized protein.	0.968
LOC107083525	rabgef1	ENSCVAP00000013227	ENSCVAP00000004032	Uncharacterized protein.	RAB guanine nucleotide exchange factor (GEF) 1.	0.968
LOC107094621	LOC107081922	ENSCVAP00000001339	ENSCVAP00000003317	Uncharacterized protein.	RAB guanine nucleotide exchange factor (GEF) 1, like.	0.643
LOC107094621	LOC107083525	ENSCVAP00000001339	ENSCVAP00000013227	Uncharacterized protein.	Uncharacterized protein.	0.471