(6 nodes) Cyclin-dependent kinase inhibitor domain superfamily network (Cyprinodon variegatus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	cdkn1b	Cyclin-dependent kinase inhibitor 1Bb. (202 aa)
	LOC107099445	Uncharacterized protein. (186 aa)
	LOC107099562	Cyclin-dependent kinase inhibitor 1D. (179 aa)
	LOC107102593	Cyclin-dependent kinase inhibitor 1Cb. (207 aa)
	LOC107099560	Uncharacterized protein. (164 aa)
	LOC107085617	Cyclin-dependent kinase inhibitor 1A. (168 aa)

Your Current Organism:

Cyprinodon variegatus

NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC107085617	cdkn1b	ENSCVAP00000032918	ENSCVAP00000024118	Cyclin-dependent kinase inhibitor 1A.	Cyclin-dependent kinase inhibitor 1Bb.	0.552
LOC107099560	LOC107102593	ENSCVAP00000026395	ENSCVAP00000006009	Uncharacterized protein.	Cyclin-dependent kinase inhibitor 1Cb.	0.900
LOC107099560	cdkn1b	ENSCVAP00000026395	ENSCVAP00000024118	Uncharacterized protein.	Cyclin-dependent kinase inhibitor 1Bb.	0.907
LOC107102593	LOC107099560	ENSCVAP00000006009	ENSCVAP00000026395	Cyclin-dependent kinase inhibitor 1Cb.	Uncharacterized protein.	0.900
LOC107102593	cdkn1b	ENSCVAP00000006009	ENSCVAP00000024118	Cyclin-dependent kinase inhibitor 1Cb.	Cyclin-dependent kinase inhibitor 1Bb.	0.905
cdkn1b	LOC107085617	ENSCVAP00000024118	ENSCVAP00000032918	Cyclin-dependent kinase inhibitor 1Bb.	Cyclin-dependent kinase inhibitor 1A.	0.552
cdkn1b	LOC107099560	ENSCVAP00000024118	ENSCVAP00000026395	Cyclin-dependent kinase inhibitor 1Bb.	Uncharacterized protein.	0.907
cdkn1b	LOC107102593	ENSCVAP00000024118	ENSCVAP00000006009	Cyclin-dependent kinase inhibitor 1Bb.	Cyclin-dependent kinase inhibitor 1Cb.	0.905