STRINGSTRING
LOC107104533 LOC107104533 LOC107086735 LOC107086735 pex5 pex5 ILRUN ILRUN LOC107101578 LOC107101578 usp30 usp30 ENSCVAP00000032381 ENSCVAP00000032381 LOC107087875 LOC107087875 LOC107102142 LOC107102142 LOC107090723 LOC107090723 LOC107090423 LOC107090423 fndc3a fndc3a CRYBB3 CRYBB3 LOC107082475 LOC107082475 LOC107102465 LOC107102465 ambra1 ambra1 ENSCVAP00000028898 ENSCVAP00000028898 ENSCVAP00000028691 ENSCVAP00000028691 tomm70 tomm70 dync1li2 dync1li2 LOC107093725 LOC107093725 chmp7 chmp7 pik3c3 pik3c3 LOC107086463 LOC107086463 wdr45b wdr45b map1lc3b map1lc3b TOMM7 TOMM7 chmp6 chmp6 lamtor3 lamtor3 LOC107096035 LOC107096035 TOMM40L TOMM40L atg7 atg7 chmp2a chmp2a LOC107101287 LOC107101287 mfn2 mfn2 LOC107088747 LOC107088747 LOC107095510 LOC107095510 atg14 atg14 uba52 uba52 pik3r4 pik3r4 LOC107097806 LOC107097806 LOC107103221 LOC107103221 LOC107100147 LOC107100147 atg13 atg13 LOC107102542 LOC107102542 ENSCVAP00000024038 ENSCVAP00000024038 mfn1 mfn1 LOC107087654 LOC107087654 kxd1 kxd1 ENSCVAP00000023371 ENSCVAP00000023371 LOC107103559 LOC107103559 nbr1 nbr1 LOC107089378 LOC107089378 LOC107091056 LOC107091056 sqstm1 sqstm1 gabarapl2 gabarapl2 ENSCVAP00000022050 ENSCVAP00000022050 tube1 tube1 LOC107089445 LOC107089445 rheb rheb ENSCVAP00000021667 ENSCVAP00000021667 cetn3 cetn3 LOC107100351 LOC107100351 ENSCVAP00000021464 ENSCVAP00000021464 atg9a atg9a tomm20 tomm20 LOC107086178 LOC107086178 ulk2 ulk2 tsc2 tsc2 LOC107086700 LOC107086700 mtor mtor prkag1 prkag1 rhebl1 rhebl1 LOC107082238 LOC107082238 LOC107093444 LOC107093444 TUBB4B TUBB4B LOC107083377 LOC107083377 LOC107081042 LOC107081042 LOC107082212 LOC107082212 ENSCVAP00000019147 ENSCVAP00000019147 LOC107099210 LOC107099210 LOC107092425 LOC107092425 tubb4b tubb4b atg3 atg3 mlst8 mlst8 becn1 becn1 uvrag uvrag atg101 atg101 WIPI1 WIPI1 mterf3 mterf3 LOC107103355 LOC107103355 LOC107091874 LOC107091874 fundc1 fundc1 lamtor2 lamtor2 wdr45 wdr45 atg5 atg5 fndc3b fndc3b ENSCVAP00000015808 ENSCVAP00000015808 LOC107100460 LOC107100460 LOC107089651 LOC107089651 rragc rragc lamtor1 lamtor1 atg4b atg4b LOC107094261 LOC107094261 ift88 ift88 ENSCVAP00000014637 ENSCVAP00000014637 atg16l1 atg16l1 LOC107094242 LOC107094242 LOC107088039 LOC107088039 LOC107088035 LOC107088035 DYNC1I1 DYNC1I1 LOC107083531 LOC107083531 map1lc3a map1lc3a ENSCVAP00000012582 ENSCVAP00000012582 txndc11 txndc11 ilrun ilrun Atm Atm ENSCVAP00000011755 ENSCVAP00000011755 LOC107102946 LOC107102946 vdac1 vdac1 ulk1 ulk1 lamtor5 lamtor5 atg4c atg4c LOC107090965 LOC107090965 LOC107090982 LOC107090982 park7 park7 tomm5 tomm5 SRC SRC ENSCVAP00000009087 ENSCVAP00000009087 ENSCVAP00000009077 ENSCVAP00000009077 ENSCVAP00000009065 ENSCVAP00000009065 chmp2b chmp2b slc38a9 slc38a9 CSNK2A2 CSNK2A2 cftr cftr ENSCVAP00000007456 ENSCVAP00000007456 Park2 Park2 LOC107089933 LOC107089933 LOC107101406 LOC107101406 LOC107098299 LOC107098299 LOC107102531 LOC107102531 ENSCVAP00000006242 ENSCVAP00000006242 pink1 pink1 LOC107095079 LOC107095079 map1lc3c map1lc3c LOC107102589 LOC107102589 lamtor4 lamtor4 rptor rptor ENSCVAP00000005753 ENSCVAP00000005753 LOC107086476 LOC107086476 ENSCVAP00000004962 ENSCVAP00000004962 rb1cc1 rb1cc1 prkaa1 prkaa1 tuba4a tuba4a chmp3 chmp3 PRKAB2 PRKAB2 rps27a rps27a LOC107100320 LOC107100320 prkaa2 prkaa2 gabarap gabarap LOC107082777 LOC107082777 wipi2 wipi2 LOC107096177 LOC107096177 ENSCVAP00000002437 ENSCVAP00000002437 atg4d atg4d LOC107091143 LOC107091143 LOC107094607 LOC107094607 tomm22 tomm22 tm9sf1 tm9sf1 LOC107098580 LOC107098580 ENSCVAP00000001149 ENSCVAP00000001149 arl13b arl13b atg10 atg10 atg12 atg12 ENSCVAP00000000186 ENSCVAP00000000186
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
LOC107104533Dynein, cytoplasmic 1, intermediate chain 2a. (606 aa)
LOC107086735Tubulin beta chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain. (444 aa)
pex5Peroxisomal biogenesis factor 5. (640 aa)
ILRUNInflammation and lipid regulator with UBA-like and NBR1-like domains. (291 aa)
LOC107101578Tubulin alpha chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain. (454 aa)
usp30Ubiquitin carboxyl-terminal hydrolase. (509 aa)
ENSCVAP00000032381WD_REPEATS_REGION domain-containing protein. (68 aa)
LOC107087875Ras-related GTP binding A. (315 aa)
LOC107102142Charged multivesicular body protein 6a. (207 aa)
LOC107090723Ubiquitin-conjugating enzyme E2 variant 1. (147 aa)
LOC107090423Dynein light chain. (89 aa)
fndc3aFibronectin type III domain containing 3A. (1234 aa)
CRYBB3Crystallin beta B3; Belongs to the beta/gamma-crystallin family. (237 aa)
LOC107082475Tubulin beta chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain. (444 aa)
LOC107102465TSC complex subunit 1b. (1258 aa)
ambra1Autophagy/beclin-1 regulator 1b. (1374 aa)
ENSCVAP00000028898Tubulin_C domain-containing protein. (134 aa)
ENSCVAP00000028691Tubulin domain-containing protein. (80 aa)
tomm70Translocase of outer mitochondrial membrane 70 homolog A (S. cerevisiae). (578 aa)
dync1li2Dynein light intermediate chain; Acts as one of several non-catalytic accessory components of the cytoplasmic dynein 1 complex that are thought to be involved in linking dynein to cargos and to adapter proteins that regulate dynein function. Cytoplasmic dynein 1 acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules. May play a role in binding dynein to membranous organelles or chromosomes. (490 aa)
LOC107093725Protein kinase, AMP-activated, gamma 3a non-catalytic subunit. (336 aa)
chmp7Charged multivesicular body protein 7. (443 aa)
pik3c3Phosphatidylinositol 3-kinase catalytic subunit type 3. (885 aa)
LOC107086463Tubulin alpha chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain. (449 aa)
wdr45bWD repeat domain 45B. (344 aa)
map1lc3bMicrotubule-associated protein 1 light chain 3 beta. (137 aa)
TOMM7Translocase of outer mitochondrial membrane 7. (51 aa)
chmp6Charged multivesicular body protein 6. (191 aa)
lamtor3Late endosomal/lysosomal adaptor, MAPK and MTOR activator 3. (124 aa)
LOC107096035Peroxisomal biogenesis factor 5-like a. (536 aa)
TOMM40LTranslocase of outer mitochondrial membrane 40 like. (318 aa)
atg7ATG7 autophagy related 7 homolog (S. cerevisiae). (668 aa)
chmp2aCharged multivesicular body protein 2A. (220 aa)
LOC107101287Dynein light intermediate chain; Acts as one of several non-catalytic accessory components of the cytoplasmic dynein 1 complex that are thought to be involved in linking dynein to cargos and to adapter proteins that regulate dynein function. Cytoplasmic dynein 1 acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules. May play a role in binding dynein to membranous organelles or chromosomes. (482 aa)
mfn2Mitofusin 2; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family. (764 aa)
LOC107088747Tubulin alpha chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain. (451 aa)
LOC107095510Translocase of outer mitochondrial membrane 40 homolog, like. (346 aa)
atg14Autophagy related 14. (501 aa)
uba52Ubiquitin A-52 residue ribosomal protein fusion product 1. (128 aa)
pik3r4Phosphoinositide-3-kinase, regulatory subunit 4. (1202 aa)
LOC107097806Protein kinase, AMP-activated, beta 1 non-catalytic subunit, b. (265 aa)
LOC107103221Tubulin domain-containing protein. (124 aa)
LOC107100147Tubulin beta chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain. (444 aa)
atg13Autophagy-related protein 13; Belongs to the ATG13 family. Metazoan subfamily. (542 aa)
LOC107102542Zgc:86598; Belongs to the protein kinase superfamily. (412 aa)
ENSCVAP00000024038Uncharacterized protein. (1429 aa)
mfn1Mitofusin 1b; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family. (758 aa)
LOC107087654Cysteine protease; Cysteine protease required for the cytoplasm to vacuole transport (Cvt) and autophagy; Belongs to the peptidase C54 family. (463 aa)
kxd1KxDL motif containing 1. (184 aa)
ENSCVAP00000023371Uncharacterized protein. (456 aa)
LOC107103559Ubiquitin-conjugating enzyme E2Nb; Belongs to the ubiquitin-conjugating enzyme family. (154 aa)
nbr1NBR1 autophagy cargo receptor a. (1069 aa)
LOC107089378Dynein light chain. (131 aa)
LOC107091056AMPKBI domain-containing protein. (269 aa)
sqstm1Sequestosome 1. (435 aa)
gabarapl2GABA(A) receptor-associated protein like 2. (116 aa)
ENSCVAP00000022050CBS domain-containing protein. (115 aa)
tube1Tubulin, epsilon 1; Belongs to the tubulin family. (443 aa)
LOC107089445Crystallin, gamma N1; Belongs to the beta/gamma-crystallin family. (183 aa)
rhebUncharacterized protein. (183 aa)
ENSCVAP00000021667Ubiquitin-like domain-containing protein. (83 aa)
cetn3Centrin 3. (167 aa)
LOC107100351Peroxisomal biogenesis factor 5-like b. (549 aa)
ENSCVAP00000021464Dynamin-type G domain-containing protein; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family. (316 aa)
atg9aAutophagy-related protein 9; Involved in autophagy and cytoplasm to vacuole transport (Cvt) vesicle formation. Plays a key role in the organization of the preautophagosomal structure/phagophore assembly site (PAS), the nucleating site for formation of the sequestering vesicle. Belongs to the ATG9 family. (851 aa)
tomm20Translocase of outer mitochondrial membrane 20b. (146 aa)
LOC107086178Casein kinase II subunit beta; Plays a complex role in regulating the basal catalytic activity of the alpha subunit; Belongs to the casein kinase 2 subunit beta family. (215 aa)
ulk2Unc-51 like autophagy activating kinase 2. (889 aa)
tsc2TSC complex subunit 2. (1708 aa)
LOC107086700Charged multivesicular body protein 4Bb. (308 aa)
mtorSerine/threonine-protein kinase TOR; Belongs to the PI3/PI4-kinase family. (2406 aa)
prkag1Protein kinase, AMP-activated, gamma 1 non-catalytic subunit. (334 aa)
rhebl1Ras homolog, mTORC1 binding like 1. (184 aa)
LOC107082238Zgc:92606. (117 aa)
LOC107093444Uncharacterized protein. (222 aa)
TUBB4BTubulin beta chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain. (445 aa)
LOC107083377Protein kinase, AMP-activated, gamma 2 non-catalytic subunit b. (543 aa)
LOC107081042AMPKBI domain-containing protein. (104 aa)
LOC107082212Tubulin beta chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain. (444 aa)
ENSCVAP00000019147WD_REPEATS_REGION domain-containing protein. (66 aa)
LOC107099210Centrin 4. (171 aa)
LOC107092425Tubulin beta chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain. (453 aa)
tubb4bTubulin beta chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain. (445 aa)
atg3Autophagy-related protein 3. (316 aa)
mlst8MTOR associated protein, LST8 homolog (S. cerevisiae). (260 aa)
becn1Beclin 1, autophagy related. (448 aa)
uvragUV radiation resistance associated gene. (729 aa)
atg101Autophagy related 101. (215 aa)
WIPI1WD repeat domain, phosphoinositide interacting 1. (445 aa)
mterf3Mitochondrial transcription termination factor 3. (418 aa)
LOC107103355Crystallin, gamma N2; Belongs to the beta/gamma-crystallin family. (183 aa)
LOC107091874Dynein, cytoplasmic 1, intermediate chain 2b. (524 aa)
fundc1FUN14 domain containing 1. (152 aa)
lamtor2Late endosomal/lysosomal adaptor, MAPK and MTOR activator 2. (125 aa)
wdr45WD repeat domain 45. (296 aa)
atg5Autophagy protein 5; Involved in autophagic vesicle formation. (275 aa)
fndc3bFibronectin type III domain containing 3Ba. (1207 aa)
ENSCVAP00000015808Uncharacterized protein. (243 aa)
LOC107100460Autophagy-related protein 9; Involved in autophagy and cytoplasm to vacuole transport (Cvt) vesicle formation. Plays a key role in the organization of the preautophagosomal structure/phagophore assembly site (PAS), the nucleating site for formation of the sequestering vesicle. Belongs to the ATG9 family. (807 aa)
LOC107089651Dynein light chain. (89 aa)
rragcRas-related GTP binding Ca. (382 aa)
lamtor1Late endosomal/lysosomal adaptor, MAPK and MTOR activator 1. (160 aa)
atg4bCysteine protease; Cysteine protease required for the cytoplasm to vacuole transport (Cvt) and autophagy; Belongs to the peptidase C54 family. (422 aa)
LOC107094261Uncharacterized protein. (375 aa)
ift88Intraflagellar transport 88 homolog. (777 aa)
ENSCVAP00000014637Uncharacterized protein. (193 aa)
atg16l1ATG16 autophagy related 16-like 1 (S. cerevisiae). (604 aa)
LOC107094242GABA type A receptor associated protein like 2. (117 aa)
LOC107088039Tubulin alpha chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain. (449 aa)
LOC107088035Tubulin alpha chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain. (450 aa)
DYNC1I1Dynein cytoplasmic 1 intermediate chain 1. (609 aa)
LOC107083531Translocase of outer mitochondrial membrane 40 homolog (yeast). (342 aa)
map1lc3aMicrotubule-associated protein 1 light chain 3 alpha. (121 aa)
ENSCVAP00000012582Tubulin_C domain-containing protein. (128 aa)
txndc11Thioredoxin domain containing 11. (843 aa)
ilrunInflammation and lipid regulator with UBA-like and NBR1-like domains. (283 aa)
AtmUncharacterized protein. (145 aa)
ENSCVAP00000011755TAN domain-containing protein. (119 aa)
LOC107102946Crystallin, beta B3; Belongs to the beta/gamma-crystallin family. (221 aa)
vdac1Voltage-dependent anion channel 1. (283 aa)
ulk1Unc-51 like autophagy activating kinase 1a. (785 aa)
lamtor5Late endosomal/lysosomal adaptor, MAPK and MTOR activator 5. (91 aa)
atg4cCysteine protease; Cysteine protease required for the cytoplasm to vacuole transport (Cvt) and autophagy; Belongs to the peptidase C54 family. (475 aa)
LOC107090965Unc-51 like autophagy activating kinase 1. (1024 aa)
LOC107090982Microtubule-associated protein 1 light chain 3 gamma, like. (136 aa)
park7Parkinson protein 7. (189 aa)
tomm5Translocase of outer mitochondrial membrane 5 homolog (yeast). (51 aa)
SRCTyrosine-protein kinase. (551 aa)
ENSCVAP00000009087Tubulin domain-containing protein. (76 aa)
ENSCVAP00000009077Tubulin domain-containing protein. (83 aa)
ENSCVAP00000009065Tubulin domain-containing protein. (81 aa)
chmp2bCharged multivesicular body protein 2Bb. (214 aa)
slc38a9Solute carrier family 38 member 9. (527 aa)
CSNK2A2Casein kinase 2 alpha 2; Belongs to the protein kinase superfamily. (350 aa)
cftrCystic fibrosis transmembrane conductance regulator; Epithelial ion channel that plays an important role in the regulation of epithelial ion and water transport and fluid homeostasis. Mediates the transport of chloride ions across the cell membrane. Channel activity is coupled to ATP hydrolysis. The ion channel is also permeable to HCO(3-); selectivity depends on the extracellular chloride concentration. Exerts its function also by modulating the activity of other ion channels and transporters. Contributes to the regulation of the pH and the ion content of the epithelial fluid layer. (1507 aa)
ENSCVAP00000007456Uncharacterized protein. (158 aa)
Park2RBR-type E3 ubiquitin transferase. (71 aa)
LOC107089933PGAM family member 5, serine/threonine protein phosphatase, mitochondrial. (301 aa)
LOC107101406Protein kinase, AMP-activated, gamma 3b non-catalytic subunit. (390 aa)
LOC107098299Vimentin like; Belongs to the intermediate filament family. (455 aa)
LOC107102531Casein kinase II subunit beta; Plays a complex role in regulating the basal catalytic activity of the alpha subunit; Belongs to the casein kinase 2 subunit beta family. (255 aa)
ENSCVAP00000006242A kinase (PRKA) anchor protein 9. (1550 aa)
pink1PTEN induced kinase 1. (472 aa)
LOC107095079Tubulin alpha chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain. (451 aa)
map1lc3cMicrotubule-associated protein 1 light chain 3 gamma. (156 aa)
LOC107102589Translocase of outer mitochondrial membrane 6 homolog (yeast). (64 aa)
lamtor4Late endosomal/lysosomal adaptor, MAPK and MTOR activator 4. (100 aa)
rptorRegulatory associated protein of MTOR, complex 1. (1373 aa)
ENSCVAP00000005753Zgc:109986. (262 aa)
LOC107086476Charged multivesicular body protein 4C. (231 aa)
ENSCVAP00000004962Tubulin alpha chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain. (324 aa)
rb1cc1RB1-inducible coiled-coil 1. (1612 aa)
prkaa1Non-specific serine/threonine protein kinase. (564 aa)
tuba4aTubulin alpha chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain. (458 aa)
chmp3Charged multivesicular body protein 3. (221 aa)
PRKAB2Protein kinase AMP-activated non-catalytic subunit beta 2. (267 aa)
rps27aRibosomal protein S27a. (181 aa)
LOC107100320WD repeat domain, phosphoinositide interacting 1. (367 aa)
prkaa2Non-specific serine/threonine protein kinase. (557 aa)
gabarapGABA(A) receptor-associated protein b. (122 aa)
LOC107082777Casein kinase 2, alpha prime polypeptide a; Belongs to the protein kinase superfamily. (356 aa)
wipi2WD repeat domain, phosphoinositide interacting 2. (427 aa)
LOC107096177Pericentrin. (3616 aa)
ENSCVAP00000002437Fzo_mitofusin domain-containing protein. (388 aa)
atg4dCysteine protease; Cysteine protease required for the cytoplasm to vacuole transport (Cvt) and autophagy; Belongs to the peptidase C54 family. (497 aa)
LOC107091143Zgc:153240. (390 aa)
LOC107094607UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family. (153 aa)
tomm22Translocase of outer mitochondrial membrane 22 homolog (yeast). (133 aa)
tm9sf1Transmembrane 9 superfamily member; Belongs to the nonaspanin (TM9SF) (TC 9.A.2) family. (594 aa)
LOC107098580Tubulin alpha chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain. (406 aa)
ENSCVAP00000001149Hist_deacetyl domain-containing protein. (423 aa)
arl13bADP-ribosylation factor-like 13b. (408 aa)
atg10Autophagy_act_C domain-containing protein. (227 aa)
atg12Ubiquitin-like protein ATG12; Ubiquitin-like protein involved in autophagic vesicle formation; Belongs to the ATG12 family. (117 aa)
ENSCVAP00000000186GSAP-16 domain-containing protein. (178 aa)
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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