28 items (Cyprinodon variegatus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	pola2	DNA polymerase alpha subunit B; Accessory subunit of the DNA polymerase alpha complex (also known as the alpha DNA polymerase-primase complex) which plays an essential role in the initiation of DNA synthesis. (604 aa)
	rfc4	Replication factor C (activator 1) 4. (357 aa)
	rfc3	Replication factor C (activator 1) 3. (356 aa)
	rfc5	Replication factor C (activator 1) 5. (335 aa)
	pold4	Si:dkey-28b4.7. (107 aa)
	pcna	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family. (260 aa)
	terf1	Telomeric repeat binding factor (NIMA-interacting) 1. (288 aa)
	LOC107092444	Polymerase (DNA-directed), delta 3, accessory subunit. (439 aa)
	Terf2	Uncharacterized protein. (95 aa)
	ENSCVAP00000010205	Uncharacterized protein. (338 aa)
	pola1	DNA polymerase. (1420 aa)
	prim1	DNA primase; Belongs to the eukaryotic-type primase small subunit family. (425 aa)
	LOC107093706	Uncharacterized protein. (421 aa)
	chtf8	CTF8, chromosome transmission fidelity factor 8 homolog (S. cerevisiae). (131 aa)
	LOC107095354	Regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2. (527 aa)
	rfc1	Replication factor C subunit 1. (1159 aa)
	Pot1	Telo_bind domain-containing protein. (332 aa)
	tinf2	TERF1 (TRF1)-interacting nuclear factor 2. (561 aa)
	pold1	DNA polymerase. (1105 aa)
	RCBTB1	RCC1 and BTB domain containing protein 1. (555 aa)
	pold2	Polymerase (DNA directed), delta 2, regulatory subunit. (487 aa)
	LOC107100955	Regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 1. (531 aa)
	rfc2	Replication factor C (activator 1) 2. (373 aa)
	dscc1	DNA replication and sister chromatid cohesion 1. (390 aa)
	chtf18	AAA domain-containing protein. (920 aa)
	ten1	TEN1 subunit of CST complex. (139 aa)
	stn1	STN1 subunit of CST complex. (350 aa)
	prim2	DNA primase large subunit; Regulatory subunit of the DNA primase complex and component of the DNA polymerase alpha complex (also known as the alpha DNA polymerase-primase complex) which play an essential role in the initiation of DNA synthesis. The primase subunit of the polymerase alpha complex initiates DNA synthesis by oligomerising short RNA primers on both leading and lagging strands. (505 aa)

Your Current Organism:

Cyprinodon variegatus

NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCVAP00000010205	LOC107092444	ENSCVAP00000010205	ENSCVAP00000008412	Uncharacterized protein.	Polymerase (DNA-directed), delta 3, accessory subunit.	0.462
ENSCVAP00000010205	LOC107093706	ENSCVAP00000010205	ENSCVAP00000013432	Uncharacterized protein.	Uncharacterized protein.	0.969
ENSCVAP00000010205	Pot1	ENSCVAP00000010205	ENSCVAP00000025139	Uncharacterized protein.	Telo_bind domain-containing protein.	0.965
ENSCVAP00000010205	Terf2	ENSCVAP00000010205	ENSCVAP00000010091	Uncharacterized protein.	Uncharacterized protein.	0.995
ENSCVAP00000010205	chtf18	ENSCVAP00000010205	ENSCVAP00000028653	Uncharacterized protein.	AAA domain-containing protein.	0.612
ENSCVAP00000010205	pcna	ENSCVAP00000010205	ENSCVAP00000002844	Uncharacterized protein.	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.	0.621
ENSCVAP00000010205	pola1	ENSCVAP00000010205	ENSCVAP00000011955	Uncharacterized protein.	DNA polymerase.	0.615
ENSCVAP00000010205	pold1	ENSCVAP00000010205	ENSCVAP00000023009	Uncharacterized protein.	DNA polymerase.	0.543
ENSCVAP00000010205	rfc3	ENSCVAP00000010205	ENSCVAP00000027749	Uncharacterized protein.	Replication factor C (activator 1) 3.	0.703
ENSCVAP00000010205	stn1	ENSCVAP00000010205	ENSCVAP00000016486	Uncharacterized protein.	STN1 subunit of CST complex.	0.649
ENSCVAP00000010205	ten1	ENSCVAP00000010205	ENSCVAP00000027977	Uncharacterized protein.	TEN1 subunit of CST complex.	0.622
ENSCVAP00000010205	terf1	ENSCVAP00000010205	ENSCVAP00000008091	Uncharacterized protein.	Telomeric repeat binding factor (NIMA-interacting) 1.	0.606
ENSCVAP00000010205	tinf2	ENSCVAP00000010205	ENSCVAP00000025227	Uncharacterized protein.	TERF1 (TRF1)-interacting nuclear factor 2.	0.969
LOC107092444	ENSCVAP00000010205	ENSCVAP00000008412	ENSCVAP00000010205	Polymerase (DNA-directed), delta 3, accessory subunit.	Uncharacterized protein.	0.462
LOC107092444	Terf2	ENSCVAP00000008412	ENSCVAP00000010091	Polymerase (DNA-directed), delta 3, accessory subunit.	Uncharacterized protein.	0.460
LOC107092444	dscc1	ENSCVAP00000008412	ENSCVAP00000016580	Polymerase (DNA-directed), delta 3, accessory subunit.	DNA replication and sister chromatid cohesion 1.	0.560
LOC107092444	pcna	ENSCVAP00000008412	ENSCVAP00000002844	Polymerase (DNA-directed), delta 3, accessory subunit.	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.	0.990
LOC107092444	pola1	ENSCVAP00000008412	ENSCVAP00000011955	Polymerase (DNA-directed), delta 3, accessory subunit.	DNA polymerase.	0.868
LOC107092444	pola2	ENSCVAP00000008412	ENSCVAP00000026450	Polymerase (DNA-directed), delta 3, accessory subunit.	DNA polymerase alpha subunit B; Accessory subunit of the DNA polymerase alpha complex (also known as the alpha DNA polymerase-primase complex) which plays an essential role in the initiation of DNA synthesis.	0.679
LOC107092444	pold1	ENSCVAP00000008412	ENSCVAP00000023009	Polymerase (DNA-directed), delta 3, accessory subunit.	DNA polymerase.	0.998