31 items (Cyprinodon variegatus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	KRAS	V-Ki-ras2 Kirsten rat sarcoma viral oncogene homolog. (189 aa)
	CSDE1	Cold shock domain containing E1, RNA-binding. (907 aa)
	MAPKAPK2	MAPK activated protein kinase 2a; Belongs to the protein kinase superfamily. (319 aa)
	LOC107102019	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (410 aa)
	MAPKAPK3	MAPK activated protein kinase 3; Belongs to the protein kinase superfamily. (403 aa)
	LOC107095138	Zgc:55558. (187 aa)
	shc2	SHC (Src homology 2 domain containing) transforming protein 2. (715 aa)
	SHC3	SHC adaptor protein 3. (664 aa)
	LOC107099411	V-ral simian leukemia viral oncogene homolog Aa (ras related). (206 aa)
	LOC107095444	V-ral simian leukemia viral oncogene homolog Ba (ras related). (207 aa)
	crkl	V-crk avian sarcoma virus CT10 oncogene homolog-like. (308 aa)
	frs2	Fibroblast growth factor receptor substrate 2b. (531 aa)
	ralgds	Ral guanine nucleotide dissociation stimulator. (852 aa)
	nkpd1	NTPase, KAP family P-loop domain containing 1. (715 aa)
	map2k1	Mitogen-activated protein kinase kinase 1; Belongs to the protein kinase superfamily. (395 aa)
	LOC107081852	Uncharacterized protein. (318 aa)
	LOC107089581	Kinase D-interacting substrate 220b. (1649 aa)
	LOC107088576	Mitogen-activated protein kinase. (364 aa)
	mapk1	Mitogen-activated protein kinase. (351 aa)
	map2k2	Mitogen-activated protein kinase kinase 2a; Belongs to the protein kinase superfamily. (399 aa)
	rapgef1	Rap guanine nucleotide exchange factor (GEF) 1b. (1217 aa)
	LOC107101186	Mitogen-activated protein kinase. (379 aa)
	LOC107084710	ANK_REP_REGION domain-containing protein. (1622 aa)
	crk	CRK proto-oncogene, adaptor protein. (310 aa)
	LOC107096025	Uncharacterized protein. (201 aa)
	LOC107101279	Mitogen-activated protein kinase 11. (293 aa)
	LOC107087504	Mitogen-activated protein kinase. (357 aa)
	LOC107101302	Nerve growth factor b (beta polypeptide); Belongs to the NGF-beta family. (197 aa)
	LOC107087023	Nerve growth factor a (beta polypeptide); Belongs to the NGF-beta family. (287 aa)
	hras	HRas proto-oncogene, GTPase a. (189 aa)
	LOC107101432	Mitogen-activated protein kinase. (360 aa)

Your Current Organism:

Cyprinodon variegatus

NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CSDE1	LOC107101186	ENSCVAP00000000427	ENSCVAP00000013006	Cold shock domain containing E1, RNA-binding.	Mitogen-activated protein kinase.	0.445
CSDE1	SHC3	ENSCVAP00000000427	ENSCVAP00000029441	Cold shock domain containing E1, RNA-binding.	SHC adaptor protein 3.	0.465
CSDE1	frs2	ENSCVAP00000000427	ENSCVAP00000026559	Cold shock domain containing E1, RNA-binding.	Fibroblast growth factor receptor substrate 2b.	0.443
CSDE1	map2k1	ENSCVAP00000000427	ENSCVAP00000004697	Cold shock domain containing E1, RNA-binding.	Mitogen-activated protein kinase kinase 1; Belongs to the protein kinase superfamily.	0.598
CSDE1	map2k2	ENSCVAP00000000427	ENSCVAP00000014852	Cold shock domain containing E1, RNA-binding.	Mitogen-activated protein kinase kinase 2a; Belongs to the protein kinase superfamily.	0.598
CSDE1	mapk1	ENSCVAP00000000427	ENSCVAP00000015363	Cold shock domain containing E1, RNA-binding.	Mitogen-activated protein kinase.	0.445
CSDE1	ralgds	ENSCVAP00000000427	ENSCVAP00000025911	Cold shock domain containing E1, RNA-binding.	Ral guanine nucleotide dissociation stimulator.	0.728
CSDE1	rapgef1	ENSCVAP00000000427	ENSCVAP00000013070	Cold shock domain containing E1, RNA-binding.	Rap guanine nucleotide exchange factor (GEF) 1b.	0.447
KRAS	LOC107095138	ENSCVAP00000004733	ENSCVAP00000004689	V-Ki-ras2 Kirsten rat sarcoma viral oncogene homolog.	Zgc:55558.	0.901
KRAS	LOC107101186	ENSCVAP00000004733	ENSCVAP00000013006	V-Ki-ras2 Kirsten rat sarcoma viral oncogene homolog.	Mitogen-activated protein kinase.	0.445
KRAS	SHC3	ENSCVAP00000004733	ENSCVAP00000029441	V-Ki-ras2 Kirsten rat sarcoma viral oncogene homolog.	SHC adaptor protein 3.	0.465
KRAS	frs2	ENSCVAP00000004733	ENSCVAP00000026559	V-Ki-ras2 Kirsten rat sarcoma viral oncogene homolog.	Fibroblast growth factor receptor substrate 2b.	0.443
KRAS	hras	ENSCVAP00000004733	ENSCVAP00000007057	V-Ki-ras2 Kirsten rat sarcoma viral oncogene homolog.	HRas proto-oncogene, GTPase a.	0.910
KRAS	map2k1	ENSCVAP00000004733	ENSCVAP00000004697	V-Ki-ras2 Kirsten rat sarcoma viral oncogene homolog.	Mitogen-activated protein kinase kinase 1; Belongs to the protein kinase superfamily.	0.598
KRAS	map2k2	ENSCVAP00000004733	ENSCVAP00000014852	V-Ki-ras2 Kirsten rat sarcoma viral oncogene homolog.	Mitogen-activated protein kinase kinase 2a; Belongs to the protein kinase superfamily.	0.598
KRAS	mapk1	ENSCVAP00000004733	ENSCVAP00000015363	V-Ki-ras2 Kirsten rat sarcoma viral oncogene homolog.	Mitogen-activated protein kinase.	0.445
KRAS	ralgds	ENSCVAP00000004733	ENSCVAP00000025911	V-Ki-ras2 Kirsten rat sarcoma viral oncogene homolog.	Ral guanine nucleotide dissociation stimulator.	0.728
KRAS	rapgef1	ENSCVAP00000004733	ENSCVAP00000013070	V-Ki-ras2 Kirsten rat sarcoma viral oncogene homolog.	Rap guanine nucleotide exchange factor (GEF) 1b.	0.447
LOC107081852	LOC107084710	ENSCVAP00000024362	ENSCVAP00000012877	Uncharacterized protein.	ANK_REP_REGION domain-containing protein.	0.526
LOC107081852	LOC107089581	ENSCVAP00000024362	ENSCVAP00000018940	Uncharacterized protein.	Kinase D-interacting substrate 220b.	0.526