12 items (Cyprinodon variegatus) - STRING interaction network

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

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second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

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Others

textmining

co-expression

protein homology

Your Input:
	LOC107085087	Nerve growth factor receptor b. (509 aa)
	prkci	Protein kinase C; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. PKC subfamily. (588 aa)
	rps27a	Ribosomal protein S27a. (181 aa)
	LOC107087023	Nerve growth factor a (beta polypeptide); Belongs to the NGF-beta family. (287 aa)
	LOC107101302	Nerve growth factor b (beta polypeptide); Belongs to the NGF-beta family. (197 aa)
	traf6	TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family. (572 aa)
	myd88	Myeloid differentiation primary response protein MyD88; Adapter protein involved in the Toll-like receptor and IL-1 receptor signaling pathway in the innate immune response. (288 aa)
	irak1	Interleukin-1 receptor-associated kinase 1. (708 aa)
	LOC107092801	Nerve growth factor receptor a (TNFR superfamily, member 16). (334 aa)
	sqstm1	Sequestosome 1. (435 aa)
	RIPK2	Receptor interacting serine/threonine kinase 2. (460 aa)
	ikbkb	Inhibitor of nuclear factor kappa B kinase subunit beta. (710 aa)

Your Current Organism:

Cyprinodon variegatus

NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC107085087	LOC107087023	ENSCVAP00000031221	ENSCVAP00000007664	Nerve growth factor receptor b.	Nerve growth factor a (beta polypeptide); Belongs to the NGF-beta family.	0.980
LOC107085087	LOC107092801	ENSCVAP00000031221	ENSCVAP00000021175	Nerve growth factor receptor b.	Nerve growth factor receptor a (TNFR superfamily, member 16).	0.906
LOC107085087	LOC107101302	ENSCVAP00000031221	ENSCVAP00000009277	Nerve growth factor receptor b.	Nerve growth factor b (beta polypeptide); Belongs to the NGF-beta family.	0.959
LOC107087023	LOC107085087	ENSCVAP00000007664	ENSCVAP00000031221	Nerve growth factor a (beta polypeptide); Belongs to the NGF-beta family.	Nerve growth factor receptor b.	0.980
LOC107087023	LOC107092801	ENSCVAP00000007664	ENSCVAP00000021175	Nerve growth factor a (beta polypeptide); Belongs to the NGF-beta family.	Nerve growth factor receptor a (TNFR superfamily, member 16).	0.998
LOC107087023	LOC107101302	ENSCVAP00000007664	ENSCVAP00000009277	Nerve growth factor a (beta polypeptide); Belongs to the NGF-beta family.	Nerve growth factor b (beta polypeptide); Belongs to the NGF-beta family.	0.901
LOC107087023	RIPK2	ENSCVAP00000007664	ENSCVAP00000030122	Nerve growth factor a (beta polypeptide); Belongs to the NGF-beta family.	Receptor interacting serine/threonine kinase 2.	0.519
LOC107087023	ikbkb	ENSCVAP00000007664	ENSCVAP00000030160	Nerve growth factor a (beta polypeptide); Belongs to the NGF-beta family.	Inhibitor of nuclear factor kappa B kinase subunit beta.	0.408
LOC107087023	irak1	ENSCVAP00000007664	ENSCVAP00000020487	Nerve growth factor a (beta polypeptide); Belongs to the NGF-beta family.	Interleukin-1 receptor-associated kinase 1.	0.490
LOC107087023	myd88	ENSCVAP00000007664	ENSCVAP00000019101	Nerve growth factor a (beta polypeptide); Belongs to the NGF-beta family.	Myeloid differentiation primary response protein MyD88; Adapter protein involved in the Toll-like receptor and IL-1 receptor signaling pathway in the innate immune response.	0.542
LOC107087023	prkci	ENSCVAP00000007664	ENSCVAP00000030195	Nerve growth factor a (beta polypeptide); Belongs to the NGF-beta family.	Protein kinase C; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. PKC subfamily.	0.439
LOC107087023	sqstm1	ENSCVAP00000007664	ENSCVAP00000022201	Nerve growth factor a (beta polypeptide); Belongs to the NGF-beta family.	Sequestosome 1.	0.488
LOC107087023	traf6	ENSCVAP00000007664	ENSCVAP00000013118	Nerve growth factor a (beta polypeptide); Belongs to the NGF-beta family.	TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.	0.515
LOC107092801	LOC107085087	ENSCVAP00000021175	ENSCVAP00000031221	Nerve growth factor receptor a (TNFR superfamily, member 16).	Nerve growth factor receptor b.	0.906
LOC107092801	LOC107087023	ENSCVAP00000021175	ENSCVAP00000007664	Nerve growth factor receptor a (TNFR superfamily, member 16).	Nerve growth factor a (beta polypeptide); Belongs to the NGF-beta family.	0.998
LOC107092801	LOC107101302	ENSCVAP00000021175	ENSCVAP00000009277	Nerve growth factor receptor a (TNFR superfamily, member 16).	Nerve growth factor b (beta polypeptide); Belongs to the NGF-beta family.	0.933
LOC107092801	RIPK2	ENSCVAP00000021175	ENSCVAP00000030122	Nerve growth factor receptor a (TNFR superfamily, member 16).	Receptor interacting serine/threonine kinase 2.	0.945
LOC107092801	ikbkb	ENSCVAP00000021175	ENSCVAP00000030160	Nerve growth factor receptor a (TNFR superfamily, member 16).	Inhibitor of nuclear factor kappa B kinase subunit beta.	0.558
LOC107092801	irak1	ENSCVAP00000021175	ENSCVAP00000020487	Nerve growth factor receptor a (TNFR superfamily, member 16).	Interleukin-1 receptor-associated kinase 1.	0.738
LOC107092801	myd88	ENSCVAP00000021175	ENSCVAP00000019101	Nerve growth factor receptor a (TNFR superfamily, member 16).	Myeloid differentiation primary response protein MyD88; Adapter protein involved in the Toll-like receptor and IL-1 receptor signaling pathway in the innate immune response.	0.654