14 items (Cyprinodon variegatus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC107086723	Mitogen-activated protein kinase. (363 aa)
	LOC107087504	Mitogen-activated protein kinase. (357 aa)
	LOC107098482	Uncharacterized protein. (470 aa)
	PAK3	Non-specific serine/threonine protein kinase. (554 aa)
	DSCAML1	DS cell adhesion molecule like 1. (1938 aa)
	dscam	Down syndrome cell adhesion molecule a. (1927 aa)
	LOC107101432	Mitogen-activated protein kinase. (360 aa)
	LOC107082492	Mitogen-activated protein kinase; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family. MAP kinase subfamily. (361 aa)
	LOC107101279	Mitogen-activated protein kinase 11. (293 aa)
	LOC107101278	Mitogen-activated protein kinase 12b. (331 aa)
	LOC107086365	Down syndrome cell adhesion molecule like 1. (1659 aa)
	LOC107088576	Mitogen-activated protein kinase. (364 aa)
	LOC107096724	Down syndrome cell adhesion molecule b. (1444 aa)
	pak1	Non-specific serine/threonine protein kinase. (563 aa)

Your Current Organism:

Cyprinodon variegatus

NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DSCAML1	PAK3	ENSCVAP00000019014	ENSCVAP00000019890	DS cell adhesion molecule like 1.	Non-specific serine/threonine protein kinase.	0.432
DSCAML1	dscam	ENSCVAP00000019014	ENSCVAP00000017734	DS cell adhesion molecule like 1.	Down syndrome cell adhesion molecule a.	0.425
DSCAML1	pak1	ENSCVAP00000019014	ENSCVAP00000024754	DS cell adhesion molecule like 1.	Non-specific serine/threonine protein kinase.	0.432
LOC107082492	PAK3	ENSCVAP00000028704	ENSCVAP00000019890	Mitogen-activated protein kinase; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family. MAP kinase subfamily.	Non-specific serine/threonine protein kinase.	0.451
LOC107082492	pak1	ENSCVAP00000028704	ENSCVAP00000024754	Mitogen-activated protein kinase; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family. MAP kinase subfamily.	Non-specific serine/threonine protein kinase.	0.447
LOC107086365	PAK3	ENSCVAP00000014645	ENSCVAP00000019890	Down syndrome cell adhesion molecule like 1.	Non-specific serine/threonine protein kinase.	0.432
LOC107086365	dscam	ENSCVAP00000014645	ENSCVAP00000017734	Down syndrome cell adhesion molecule like 1.	Down syndrome cell adhesion molecule a.	0.425
LOC107086365	pak1	ENSCVAP00000014645	ENSCVAP00000024754	Down syndrome cell adhesion molecule like 1.	Non-specific serine/threonine protein kinase.	0.432
LOC107086723	PAK3	ENSCVAP00000000499	ENSCVAP00000019890	Mitogen-activated protein kinase.	Non-specific serine/threonine protein kinase.	0.451
LOC107086723	pak1	ENSCVAP00000000499	ENSCVAP00000024754	Mitogen-activated protein kinase.	Non-specific serine/threonine protein kinase.	0.456
LOC107087504	PAK3	ENSCVAP00000010645	ENSCVAP00000019890	Mitogen-activated protein kinase.	Non-specific serine/threonine protein kinase.	0.414
LOC107087504	pak1	ENSCVAP00000010645	ENSCVAP00000024754	Mitogen-activated protein kinase.	Non-specific serine/threonine protein kinase.	0.414
LOC107088576	PAK3	ENSCVAP00000016108	ENSCVAP00000019890	Mitogen-activated protein kinase.	Non-specific serine/threonine protein kinase.	0.414
LOC107088576	pak1	ENSCVAP00000016108	ENSCVAP00000024754	Mitogen-activated protein kinase.	Non-specific serine/threonine protein kinase.	0.448
LOC107096724	LOC107098482	ENSCVAP00000027666	ENSCVAP00000021055	Down syndrome cell adhesion molecule b.	Uncharacterized protein.	0.785
LOC107098482	LOC107096724	ENSCVAP00000021055	ENSCVAP00000027666	Uncharacterized protein.	Down syndrome cell adhesion molecule b.	0.785
LOC107101278	PAK3	ENSCVAP00000010869	ENSCVAP00000019890	Mitogen-activated protein kinase 12b.	Non-specific serine/threonine protein kinase.	0.414
LOC107101278	pak1	ENSCVAP00000010869	ENSCVAP00000024754	Mitogen-activated protein kinase 12b.	Non-specific serine/threonine protein kinase.	0.414
LOC107101279	PAK3	ENSCVAP00000010757	ENSCVAP00000019890	Mitogen-activated protein kinase 11.	Non-specific serine/threonine protein kinase.	0.451
LOC107101279	pak1	ENSCVAP00000010757	ENSCVAP00000024754	Mitogen-activated protein kinase 11.	Non-specific serine/threonine protein kinase.	0.452