22 items (Cyprinodon variegatus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSCVAP00000010746	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. Tyr protein kinase family. (346 aa)
	LOC107100440	Rho guanine nucleotide exchange factor (GEF) 7a. (748 aa)
	LOC107090696	Eph receptor B2a. (963 aa)
	ENSCVAP00000031975	Eph LBD domain-containing protein. (158 aa)
	LOC107099944	Syndecan binding protein (syntenin) 2. (285 aa)
	LOC107090819	Ephrin RBD domain-containing protein; Belongs to the ephrin family. (321 aa)
	pak2	Non-specific serine/threonine protein kinase. (528 aa)
	efnb3	Ephrin-B3a; Belongs to the ephrin family. (342 aa)
	fndc3b	Fibronectin type III domain containing 3Ba. (1207 aa)
	efnb1	Ephrin-B1; Belongs to the ephrin family. (336 aa)
	fyn	Tyrosine-protein kinase. (537 aa)
	PAK3	Non-specific serine/threonine protein kinase. (554 aa)
	ephb1	EPH receptor B1. (984 aa)
	efnb2	Ephrin-B2a; Belongs to the ephrin family. (334 aa)
	pak1	Non-specific serine/threonine protein kinase. (563 aa)
	ephb2	Eph receptor B2b. (988 aa)
	ENSCVAP00000029398	SAM domain-containing protein. (167 aa)
	PAK2	Non-specific serine/threonine protein kinase. (510 aa)
	fndc3a	Fibronectin type III domain containing 3A. (1234 aa)
	LOC107096191	Tyrosine-protein kinase. (537 aa)
	arhgef7	Rho guanine nucleotide exchange factor (GEF) 7b. (788 aa)
	SRC	Tyrosine-protein kinase. (551 aa)

Your Current Organism:

Cyprinodon variegatus

NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCVAP00000010746	LOC107090819	ENSCVAP00000010746	ENSCVAP00000012514	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. Tyr protein kinase family.	Ephrin RBD domain-containing protein; Belongs to the ephrin family.	0.569
ENSCVAP00000010746	LOC107099944	ENSCVAP00000010746	ENSCVAP00000011951	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. Tyr protein kinase family.	Syndecan binding protein (syntenin) 2.	0.415
ENSCVAP00000010746	efnb1	ENSCVAP00000010746	ENSCVAP00000017823	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. Tyr protein kinase family.	Ephrin-B1; Belongs to the ephrin family.	0.574
ENSCVAP00000010746	efnb2	ENSCVAP00000010746	ENSCVAP00000024514	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. Tyr protein kinase family.	Ephrin-B2a; Belongs to the ephrin family.	0.573
ENSCVAP00000010746	efnb3	ENSCVAP00000010746	ENSCVAP00000014064	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. Tyr protein kinase family.	Ephrin-B3a; Belongs to the ephrin family.	0.576
ENSCVAP00000029398	LOC107090819	ENSCVAP00000029398	ENSCVAP00000012514	SAM domain-containing protein.	Ephrin RBD domain-containing protein; Belongs to the ephrin family.	0.537
ENSCVAP00000029398	LOC107099944	ENSCVAP00000029398	ENSCVAP00000011951	SAM domain-containing protein.	Syndecan binding protein (syntenin) 2.	0.415
ENSCVAP00000029398	efnb1	ENSCVAP00000029398	ENSCVAP00000017823	SAM domain-containing protein.	Ephrin-B1; Belongs to the ephrin family.	0.573
ENSCVAP00000029398	efnb2	ENSCVAP00000029398	ENSCVAP00000024514	SAM domain-containing protein.	Ephrin-B2a; Belongs to the ephrin family.	0.573
ENSCVAP00000029398	efnb3	ENSCVAP00000029398	ENSCVAP00000014064	SAM domain-containing protein.	Ephrin-B3a; Belongs to the ephrin family.	0.573
ENSCVAP00000031975	LOC107090819	ENSCVAP00000031975	ENSCVAP00000012514	Eph LBD domain-containing protein.	Ephrin RBD domain-containing protein; Belongs to the ephrin family.	0.569
ENSCVAP00000031975	LOC107099944	ENSCVAP00000031975	ENSCVAP00000011951	Eph LBD domain-containing protein.	Syndecan binding protein (syntenin) 2.	0.415
ENSCVAP00000031975	efnb1	ENSCVAP00000031975	ENSCVAP00000017823	Eph LBD domain-containing protein.	Ephrin-B1; Belongs to the ephrin family.	0.574
ENSCVAP00000031975	efnb2	ENSCVAP00000031975	ENSCVAP00000024514	Eph LBD domain-containing protein.	Ephrin-B2a; Belongs to the ephrin family.	0.573
ENSCVAP00000031975	efnb3	ENSCVAP00000031975	ENSCVAP00000014064	Eph LBD domain-containing protein.	Ephrin-B3a; Belongs to the ephrin family.	0.576
LOC107090696	LOC107090819	ENSCVAP00000031888	ENSCVAP00000012514	Eph receptor B2a.	Ephrin RBD domain-containing protein; Belongs to the ephrin family.	0.537
LOC107090696	LOC107099944	ENSCVAP00000031888	ENSCVAP00000011951	Eph receptor B2a.	Syndecan binding protein (syntenin) 2.	0.415
LOC107090696	efnb1	ENSCVAP00000031888	ENSCVAP00000017823	Eph receptor B2a.	Ephrin-B1; Belongs to the ephrin family.	0.827
LOC107090696	efnb2	ENSCVAP00000031888	ENSCVAP00000024514	Eph receptor B2a.	Ephrin-B2a; Belongs to the ephrin family.	0.698
LOC107090696	efnb3	ENSCVAP00000031888	ENSCVAP00000014064	Eph receptor B2a.	Ephrin-B3a; Belongs to the ephrin family.	0.698