51 items (Cyprinodon variegatus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC107091957	Translocated promoter region b, nuclear basket protein. (2192 aa)
	nup107	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC). (878 aa)
	LOC107085518	Chromobox homolog 8b. (387 aa)
	ENSCVAP00000006163	Bmi1 polycomb ring finger oncogene 1a. (332 aa)
	nup50	Nucleoporin 50. (447 aa)
	ENSCVAP00000006947	Rad60-SLD domain-containing protein. (58 aa)
	nup42	C3H1-type domain-containing protein. (407 aa)
	RING1	Ring finger protein 1. (389 aa)
	nup93	Nuclear pore complex protein Nup93; Plays a role in the nuclear pore complex (NPC) assembly and/or maintenance; Belongs to the nucleoporin interacting component (NIC) family. (820 aa)
	sumo1	Small ubiquitin-related modifier. (76 aa)
	LOC107087339-2	NOP58 ribonucleoprotein homolog (yeast). (536 aa)
	nup160	Nucleoporin 160. (1142 aa)
	ENSCVAP00000011358	Uncharacterized protein. (544 aa)
	nup133	Nucleoporin 133. (1135 aa)
	LOC107090301	POM121 transmembrane nucleoporin. (1152 aa)
	aaas	Achalasia, adrenocortical insufficiency, alacrimia. (518 aa)
	ranbp2	RAN binding protein 2. (3248 aa)
	LOC107102835	RRM domain-containing protein. (324 aa)
	tpr	Translocated promoter region a, nuclear basket protein. (1972 aa)
	rnf2	Ring finger protein 2. (342 aa)
	nup155	Nucleoporin 155. (1358 aa)
	LOC107089015	Uncharacterized protein. (901 aa)
	ube2i	Ubiquitin-conjugating enzyme E2Ib; Belongs to the ubiquitin-conjugating enzyme family. (158 aa)
	ENSCVAP00000020777	Nucleoporin 88. (504 aa)
	Nup88	Uncharacterized protein. (123 aa)
	LOC107092841	Chromobox homolog 4 (Pc class homolog, Drosophila). (549 aa)
	LOC107087199	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family. (158 aa)
	ENSCVAP00000023138	Heterogeneous nuclear ribonucleoprotein K. (364 aa)
	cbx4	Chromobox 4. (565 aa)
	Seh1l	SEH1-like (S. cerevisiae); Belongs to the WD repeat SEC13 family. (188 aa)
	ranbp3	RAN binding protein 3b. (517 aa)
	nup210	Nucleoporin 210. (1891 aa)
	nup188	Nucleoporin 188. (1724 aa)
	nup37	Nucleoporin 37. (326 aa)
	nup98	Nucleoporin 98. (1810 aa)
	ENSCVAP00000031585	Uncharacterized protein. (85 aa)
	nup43	Nucleoporin 43. (370 aa)
	LOC107082280	Uncharacterized protein. (599 aa)
	ENSCVAP00000032378	Uncharacterized protein. (106 aa)
	LOC107088984	Heterogeneous nuclear ribonucleoprotein K, like. (464 aa)
	nup35	Nucleoporin NUP53; Functions as a component of the nuclear pore complex (NPC). Belongs to the Nup35 family. (294 aa)
	LOC107089511	Potassium channel tetramerization domain containing 2. (267 aa)
	LOC107103912	RRM domain-containing protein. (288 aa)
	LOC107092814	Chromobox homolog 8a (Pc class homolog, Drosophila). (340 aa)
	nup85	Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC). (654 aa)
	sumo2	Small ubiquitin-related modifier. (95 aa)
	LOC107096192	Small ubiquitin-related modifier. (94 aa)
	nup58	Nucleoporin 58. (592 aa)
	nup205	Nucleoporin 205. (1988 aa)
	LOC107087147	Small ubiquitin-related modifier. (94 aa)
	rae1	Ribonucleic acid export 1. (368 aa)

Your Current Organism:

Cyprinodon variegatus

NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCVAP00000006163	ENSCVAP00000023138	ENSCVAP00000006163	ENSCVAP00000023138	Bmi1 polycomb ring finger oncogene 1a.	Heterogeneous nuclear ribonucleoprotein K.	0.431
ENSCVAP00000006163	ENSCVAP00000032378	ENSCVAP00000006163	ENSCVAP00000032378	Bmi1 polycomb ring finger oncogene 1a.	Uncharacterized protein.	0.431
ENSCVAP00000006163	LOC107085518	ENSCVAP00000006163	ENSCVAP00000005519	Bmi1 polycomb ring finger oncogene 1a.	Chromobox homolog 8b.	0.861
ENSCVAP00000006163	LOC107087199	ENSCVAP00000006163	ENSCVAP00000021415	Bmi1 polycomb ring finger oncogene 1a.	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	0.537
ENSCVAP00000006163	LOC107088984	ENSCVAP00000006163	ENSCVAP00000032824	Bmi1 polycomb ring finger oncogene 1a.	Heterogeneous nuclear ribonucleoprotein K, like.	0.431
ENSCVAP00000006163	LOC107089015	ENSCVAP00000006163	ENSCVAP00000018662	Bmi1 polycomb ring finger oncogene 1a.	Uncharacterized protein.	0.665
ENSCVAP00000006163	LOC107089511	ENSCVAP00000006163	ENSCVAP00000001600	Bmi1 polycomb ring finger oncogene 1a.	Potassium channel tetramerization domain containing 2.	0.484
ENSCVAP00000006163	LOC107092814	ENSCVAP00000006163	ENSCVAP00000001830	Bmi1 polycomb ring finger oncogene 1a.	Chromobox homolog 8a (Pc class homolog, Drosophila).	0.861
ENSCVAP00000006163	LOC107092841	ENSCVAP00000006163	ENSCVAP00000021067	Bmi1 polycomb ring finger oncogene 1a.	Chromobox homolog 4 (Pc class homolog, Drosophila).	0.834
ENSCVAP00000006163	RING1	ENSCVAP00000006163	ENSCVAP00000008579	Bmi1 polycomb ring finger oncogene 1a.	Ring finger protein 1.	0.939
ENSCVAP00000006163	cbx4	ENSCVAP00000006163	ENSCVAP00000023508	Bmi1 polycomb ring finger oncogene 1a.	Chromobox 4.	0.834
ENSCVAP00000006163	rnf2	ENSCVAP00000006163	ENSCVAP00000018052	Bmi1 polycomb ring finger oncogene 1a.	Ring finger protein 2.	0.939
ENSCVAP00000006163	sumo1	ENSCVAP00000006163	ENSCVAP00000009217	Bmi1 polycomb ring finger oncogene 1a.	Small ubiquitin-related modifier.	0.414
ENSCVAP00000006163	ube2i	ENSCVAP00000006163	ENSCVAP00000019192	Bmi1 polycomb ring finger oncogene 1a.	Ubiquitin-conjugating enzyme E2Ib; Belongs to the ubiquitin-conjugating enzyme family.	0.537
ENSCVAP00000006947	ENSCVAP00000020777	ENSCVAP00000006947	ENSCVAP00000020777	Rad60-SLD domain-containing protein.	Nucleoporin 88.	0.410
ENSCVAP00000006947	ENSCVAP00000023138	ENSCVAP00000006947	ENSCVAP00000023138	Rad60-SLD domain-containing protein.	Heterogeneous nuclear ribonucleoprotein K.	0.406
ENSCVAP00000006947	ENSCVAP00000032378	ENSCVAP00000006947	ENSCVAP00000032378	Rad60-SLD domain-containing protein.	Uncharacterized protein.	0.406
ENSCVAP00000006947	LOC107087199	ENSCVAP00000006947	ENSCVAP00000021415	Rad60-SLD domain-containing protein.	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	0.821
ENSCVAP00000006947	LOC107087339-2	ENSCVAP00000006947	ENSCVAP00000009569	Rad60-SLD domain-containing protein.	NOP58 ribonucleoprotein homolog (yeast).	0.622
ENSCVAP00000006947	LOC107088984	ENSCVAP00000006947	ENSCVAP00000032824	Rad60-SLD domain-containing protein.	Heterogeneous nuclear ribonucleoprotein K, like.	0.406