36 items (Cyprinodon variegatus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC107089315	Sodium channel protein; Mediates the voltage-dependent sodium ion permeability of excitable membranes. Assuming opened or closed conformations in response to the voltage difference across the membrane, the protein forms a sodium-selective channel through which Na(+) ions may pass in accordance with their electrochemical gradient. (1709 aa)
	LOC107083782	Fibroblast growth factor; Belongs to the heparin-binding growth factors family. (241 aa)
	scn1b	Sodium channel, voltage-gated, type I, beta a. (216 aa)
	LOC107097594	Voltage-dependent calcium channel gamma-4 subunit; Regulates the activity of L-type calcium channels that contain CACNA1C as pore-forming subunit (By similarity). Regulates the trafficking and gating properties of AMPA-selective glutamate receptors (AMPARs), including GRIA1 and GRIA4. Promotes their targeting to the cell membrane and synapses and modulates their gating properties by slowing their rates of activation, deactivation and desensitization and by mediating their resensitization; Belongs to the PMP-22/EMP/MP20 family. CACNG subfamily. (324 aa)
	LOC107102913	Calcium channel, voltage-dependent, alpha 2/delta subunit 2b. (1050 aa)
	LOC107097019	Sodium channel protein; Mediates the voltage-dependent sodium ion permeability of excitable membranes. Assuming opened or closed conformations in response to the voltage difference across the membrane, the protein forms a sodium-selective channel through which Na(+) ions may pass in accordance with their electrochemical gradient. (1826 aa)
	fgf11	Fibroblast growth factor; Belongs to the heparin-binding growth factors family. (249 aa)
	LOC107085985	Calcium channel, voltage-dependent, alpha 2/delta subunit 1a. (1088 aa)
	LOC107087192	Sodium channel protein; Mediates the voltage-dependent sodium ion permeability of excitable membranes. Assuming opened or closed conformations in response to the voltage difference across the membrane, the protein forms a sodium-selective channel through which Na(+) ions may pass in accordance with their electrochemical gradient. (2002 aa)
	cacnb1	Calcium channel, voltage-dependent, beta 1 subunit. (475 aa)
	ENSCVAP00000027322	Calcium channel, voltage-dependent, beta 2b. (347 aa)
	cacng5	Calcium channel, voltage-dependent, gamma subunit 5a. (277 aa)
	fgf12	Fibroblast growth factor; Belongs to the heparin-binding growth factors family. (223 aa)
	LOC107094212	Sodium channel, voltage-gated, type IV, beta a. (233 aa)
	LOC107092533	Calcium channel, voltage-dependent, gamma subunit 5b. (276 aa)
	LOC107089001	Calcium channel, voltage-dependent, gamma subunit 6a. (287 aa)
	LOC107088996	Calcium channel, voltage-dependent, gamma subunit 8a. (450 aa)
	FGF14	Fibroblast growth factor; Belongs to the heparin-binding growth factors family. (254 aa)
	LOC107090820	Sodium channel, voltage-gated, type I, beta b. (203 aa)
	LOC107089007	Voltage-dependent calcium channel gamma-7 subunit; Regulates the activity of L-type calcium channels that contain CACNA1C as pore-forming subunit (By similarity). Regulates the trafficking and gating properties of AMPA-selective glutamate receptors (AMPARs). Promotes their targeting to the cell membrane and synapses and modulates their gating properties by slowing their rates of activation, deactivation and desensitization and by mediating their resensitization. Shows specificity only for GRIA1 and GRIA2. Belongs to the PMP-22/EMP/MP20 family. CACNG subfamily. (373 aa)
	LOC107100956	Fibroblast growth factor; Belongs to the heparin-binding growth factors family. (383 aa)
	cacnb2	Calcium channel, voltage-dependent, beta 2a. (697 aa)
	ENSCVAP00000019361	VWFA domain-containing protein. (283 aa)
	LOC107081157	Sodium channel protein; Mediates the voltage-dependent sodium ion permeability of excitable membranes. Assuming opened or closed conformations in response to the voltage difference across the membrane, the protein forms a sodium-selective channel through which Na(+) ions may pass in accordance with their electrochemical gradient. (502 aa)
	LOC107082163	Calcium channel, voltage-dependent, gamma subunit 8b. (413 aa)
	LOC107082042	Sodium channel protein; Mediates the voltage-dependent sodium ion permeability of excitable membranes. Assuming opened or closed conformations in response to the voltage difference across the membrane, the protein forms a sodium-selective channel through which Na(+) ions may pass in accordance with their electrochemical gradient. (1867 aa)
	ENSCVAP00000023123	Calcium channel, voltage-dependent, alpha 2/delta subunit 2a. (857 aa)
	LOC107082559	Fibroblast growth factor; Belongs to the heparin-binding growth factors family. (247 aa)
	LOC107092725	Sodium channel protein; Mediates the voltage-dependent sodium ion permeability of excitable membranes. Assuming opened or closed conformations in response to the voltage difference across the membrane, the protein forms a sodium-selective channel through which Na(+) ions may pass in accordance with their electrochemical gradient. (1724 aa)
	LOC107082251	Calcium channel, voltage-dependent, gamma subunit 6b. (265 aa)
	LOC107082088	Sodium channel protein; Mediates the voltage-dependent sodium ion permeability of excitable membranes. Assuming opened or closed conformations in response to the voltage difference across the membrane, the protein forms a sodium-selective channel through which Na(+) ions may pass in accordance with their electrochemical gradient. (1844 aa)
	ENSCVAP00000001571	Uncharacterized protein. (147 aa)
	Rangrf	RAN guanine nucleotide release factor. (197 aa)
	LOC107100306	Voltage-dependent calcium channel gamma-7 subunit; Regulates the activity of L-type calcium channels that contain CACNA1C as pore-forming subunit (By similarity). Regulates the trafficking and gating properties of AMPA-selective glutamate receptors (AMPARs). Promotes their targeting to the cell membrane and synapses and modulates their gating properties by slowing their rates of activation, deactivation and desensitization and by mediating their resensitization. Shows specificity only for GRIA1 and GRIA2. Belongs to the PMP-22/EMP/MP20 family. CACNG subfamily. (341 aa)
	LOC107095155	Sodium channel protein; Mediates the voltage-dependent sodium ion permeability of excitable membranes. Assuming opened or closed conformations in response to the voltage difference across the membrane, the protein forms a sodium-selective channel through which Na(+) ions may pass in accordance with their electrochemical gradient. (1761 aa)
	scn3b	Sodium channel, voltage-gated, type III, beta. (217 aa)

Your Current Organism:

Cyprinodon variegatus

NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCVAP00000001571	LOC107081157	ENSCVAP00000001571	ENSCVAP00000019418	Uncharacterized protein.	Sodium channel protein; Mediates the voltage-dependent sodium ion permeability of excitable membranes. Assuming opened or closed conformations in response to the voltage difference across the membrane, the protein forms a sodium-selective channel through which Na(+) ions may pass in accordance with their electrochemical gradient.	0.716
ENSCVAP00000001571	LOC107082042	ENSCVAP00000001571	ENSCVAP00000020675	Uncharacterized protein.	Sodium channel protein; Mediates the voltage-dependent sodium ion permeability of excitable membranes. Assuming opened or closed conformations in response to the voltage difference across the membrane, the protein forms a sodium-selective channel through which Na(+) ions may pass in accordance with their electrochemical gradient.	0.716
ENSCVAP00000001571	LOC107082088	ENSCVAP00000001571	ENSCVAP00000000550	Uncharacterized protein.	Sodium channel protein; Mediates the voltage-dependent sodium ion permeability of excitable membranes. Assuming opened or closed conformations in response to the voltage difference across the membrane, the protein forms a sodium-selective channel through which Na(+) ions may pass in accordance with their electrochemical gradient.	0.728
ENSCVAP00000001571	LOC107087192	ENSCVAP00000001571	ENSCVAP00000025853	Uncharacterized protein.	Sodium channel protein; Mediates the voltage-dependent sodium ion permeability of excitable membranes. Assuming opened or closed conformations in response to the voltage difference across the membrane, the protein forms a sodium-selective channel through which Na(+) ions may pass in accordance with their electrochemical gradient.	0.716
ENSCVAP00000001571	LOC107089315	ENSCVAP00000001571	ENSCVAP00000005844	Uncharacterized protein.	Sodium channel protein; Mediates the voltage-dependent sodium ion permeability of excitable membranes. Assuming opened or closed conformations in response to the voltage difference across the membrane, the protein forms a sodium-selective channel through which Na(+) ions may pass in accordance with their electrochemical gradient.	0.817
ENSCVAP00000001571	LOC107090820	ENSCVAP00000001571	ENSCVAP00000014446	Uncharacterized protein.	Sodium channel, voltage-gated, type I, beta b.	0.549
ENSCVAP00000001571	LOC107092725	ENSCVAP00000001571	ENSCVAP00000024016	Uncharacterized protein.	Sodium channel protein; Mediates the voltage-dependent sodium ion permeability of excitable membranes. Assuming opened or closed conformations in response to the voltage difference across the membrane, the protein forms a sodium-selective channel through which Na(+) ions may pass in accordance with their electrochemical gradient.	0.817
ENSCVAP00000001571	LOC107094212	ENSCVAP00000001571	ENSCVAP00000030366	Uncharacterized protein.	Sodium channel, voltage-gated, type IV, beta a.	0.476
ENSCVAP00000001571	LOC107095155	ENSCVAP00000001571	ENSCVAP00000004008	Uncharacterized protein.	Sodium channel protein; Mediates the voltage-dependent sodium ion permeability of excitable membranes. Assuming opened or closed conformations in response to the voltage difference across the membrane, the protein forms a sodium-selective channel through which Na(+) ions may pass in accordance with their electrochemical gradient.	0.728
ENSCVAP00000001571	LOC107097019	ENSCVAP00000001571	ENSCVAP00000013009	Uncharacterized protein.	Sodium channel protein; Mediates the voltage-dependent sodium ion permeability of excitable membranes. Assuming opened or closed conformations in response to the voltage difference across the membrane, the protein forms a sodium-selective channel through which Na(+) ions may pass in accordance with their electrochemical gradient.	0.716
ENSCVAP00000001571	scn1b	ENSCVAP00000001571	ENSCVAP00000007626	Uncharacterized protein.	Sodium channel, voltage-gated, type I, beta a.	0.409
ENSCVAP00000001571	scn3b	ENSCVAP00000001571	ENSCVAP00000004924	Uncharacterized protein.	Sodium channel, voltage-gated, type III, beta.	0.451
ENSCVAP00000019361	ENSCVAP00000027322	ENSCVAP00000019361	ENSCVAP00000027322	VWFA domain-containing protein.	Calcium channel, voltage-dependent, beta 2b.	0.659
ENSCVAP00000019361	LOC107081157	ENSCVAP00000019361	ENSCVAP00000019418	VWFA domain-containing protein.	Sodium channel protein; Mediates the voltage-dependent sodium ion permeability of excitable membranes. Assuming opened or closed conformations in response to the voltage difference across the membrane, the protein forms a sodium-selective channel through which Na(+) ions may pass in accordance with their electrochemical gradient.	0.436
ENSCVAP00000019361	LOC107082042	ENSCVAP00000019361	ENSCVAP00000020675	VWFA domain-containing protein.	Sodium channel protein; Mediates the voltage-dependent sodium ion permeability of excitable membranes. Assuming opened or closed conformations in response to the voltage difference across the membrane, the protein forms a sodium-selective channel through which Na(+) ions may pass in accordance with their electrochemical gradient.	0.436
ENSCVAP00000019361	LOC107082088	ENSCVAP00000019361	ENSCVAP00000000550	VWFA domain-containing protein.	Sodium channel protein; Mediates the voltage-dependent sodium ion permeability of excitable membranes. Assuming opened or closed conformations in response to the voltage difference across the membrane, the protein forms a sodium-selective channel through which Na(+) ions may pass in accordance with their electrochemical gradient.	0.436
ENSCVAP00000019361	LOC107082163	ENSCVAP00000019361	ENSCVAP00000020102	VWFA domain-containing protein.	Calcium channel, voltage-dependent, gamma subunit 8b.	0.413
ENSCVAP00000019361	LOC107087192	ENSCVAP00000019361	ENSCVAP00000025853	VWFA domain-containing protein.	Sodium channel protein; Mediates the voltage-dependent sodium ion permeability of excitable membranes. Assuming opened or closed conformations in response to the voltage difference across the membrane, the protein forms a sodium-selective channel through which Na(+) ions may pass in accordance with their electrochemical gradient.	0.436
ENSCVAP00000019361	LOC107088996	ENSCVAP00000019361	ENSCVAP00000032182	VWFA domain-containing protein.	Calcium channel, voltage-dependent, gamma subunit 8a.	0.413
ENSCVAP00000019361	LOC107089315	ENSCVAP00000019361	ENSCVAP00000005844	VWFA domain-containing protein.	Sodium channel protein; Mediates the voltage-dependent sodium ion permeability of excitable membranes. Assuming opened or closed conformations in response to the voltage difference across the membrane, the protein forms a sodium-selective channel through which Na(+) ions may pass in accordance with their electrochemical gradient.	0.436