STRINGSTRING
LOC107091169 LOC107091169 pcna pcna rps27a rps27a LOC107088102 LOC107088102 poli poli mad2l2 mad2l2 rpa3 rpa3 rpa2 rpa2 LOC107095354 LOC107095354 rev1 rev1 rpa1 rpa1 ENSCVAP00000016466 ENSCVAP00000016466 rfc4 rfc4 ENSCVAP00000019055 ENSCVAP00000019055 rfc2 rfc2 ENSCVAP00000019159 ENSCVAP00000019159 LOC107100955 LOC107100955 rev3l rev3l ENSCVAP00000021667 ENSCVAP00000021667 RCBTB1 RCBTB1 kxd1 kxd1 rfc1 rfc1 uba52 uba52 rfc3 rfc3 rfc5 rfc5
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
LOC107091169ATPase family AAA domain containing 5a. (1526 aa)
pcnaProliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family. (260 aa)
rps27aRibosomal protein S27a. (181 aa)
LOC107088102Replication protein A subunit; As part of the heterotrimeric replication protein A complex (RPA/RP-A), binds and stabilizes single-stranded DNA intermediates, that form during DNA replication or upon DNA stress. It prevents their reannealing and in parallel, recruits and activates different proteins and complexes involved in DNA metabolism. Thereby, it plays an essential role both in DNA replication and the cellular response to DNA damage. (670 aa)
poliPolymerase (DNA directed) iota. (618 aa)
mad2l2Mitotic arrest deficient 2 like 2. (210 aa)
rpa3Replication protein A3. (122 aa)
rpa2Replication protein A2. (278 aa)
LOC107095354Regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2. (527 aa)
rev1REV1 DNA directed polymerase. (1355 aa)
rpa1Replication protein A subunit; As part of the heterotrimeric replication protein A complex (RPA/RP-A), binds and stabilizes single-stranded DNA intermediates, that form during DNA replication or upon DNA stress. It prevents their reannealing and in parallel, recruits and activates different proteins and complexes involved in DNA metabolism. Thereby, it plays an essential role both in DNA replication and the cellular response to DNA damage. (606 aa)
ENSCVAP00000016466Uncharacterized protein. (164 aa)
rfc4Replication factor C (activator 1) 4. (357 aa)
ENSCVAP00000019055Uncharacterized protein. (256 aa)
rfc2Replication factor C (activator 1) 2. (373 aa)
ENSCVAP00000019159Methionine sulfoxide reductase B1b. (252 aa)
LOC107100955Regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 1. (531 aa)
rev3lREV3 like, DNA directed polymerase zeta catalytic subunit. (2776 aa)
ENSCVAP00000021667Ubiquitin-like domain-containing protein. (83 aa)
RCBTB1RCC1 and BTB domain containing protein 1. (555 aa)
kxd1KxDL motif containing 1. (184 aa)
rfc1Replication factor C subunit 1. (1159 aa)
uba52Ubiquitin A-52 residue ribosomal protein fusion product 1. (128 aa)
rfc3Replication factor C (activator 1) 3. (356 aa)
rfc5Replication factor C (activator 1) 5. (335 aa)
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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