118 items (Cyprinodon variegatus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSCVAP00000006385	Uncharacterized protein. (306 aa)
	LOC107084004	Bloodthirsty-related gene family, member 12. (568 aa)
	ENSCVAP00000030621	B30.2/SPRY domain-containing protein. (284 aa)
	ENSCVAP00000030387	B30.2/SPRY domain-containing protein. (224 aa)
	ENSCVAP00000030324	B30.2/SPRY domain-containing protein. (292 aa)
	rfc5	Replication factor C (activator 1) 5. (335 aa)
	ENSCVAP00000029795	Uncharacterized protein. (369 aa)
	LOC107091974	Uncharacterized protein. (541 aa)
	ENSCVAP00000028625	Uncharacterized protein. (206 aa)
	LOC107092035	Uncharacterized protein. (552 aa)
	rfc3	Replication factor C (activator 1) 3. (356 aa)
	LOC107089758	Uncharacterized protein. (510 aa)
	ENSCVAP00000027550	Uncharacterized protein. (556 aa)
	ENSCVAP00000026881	Uncharacterized protein. (520 aa)
	usp43	Ubiquitin specific peptidase 43b; Belongs to the peptidase C19 family. (1207 aa)
	LOC107095499	Uncharacterized protein. (610 aa)
	uba52	Ubiquitin A-52 residue ribosomal protein fusion product 1. (128 aa)
	ENSCVAP00000025529	RING-type domain-containing protein. (103 aa)
	ENSCVAP00000025140	B30.2/SPRY domain-containing protein. (191 aa)
	ENSCVAP00000025138	B30.2/SPRY domain-containing protein. (278 aa)
	ENSCVAP00000025107	Uncharacterized protein. (308 aa)
	ENSCVAP00000025091	Uncharacterized protein. (268 aa)
	ENSCVAP00000024939	RING-type domain-containing protein. (186 aa)
	LOC107084392	Uncharacterized protein. (401 aa)
	rfc1	Replication factor C subunit 1. (1159 aa)
	kxd1	KxDL motif containing 1. (184 aa)
	pold1	DNA polymerase. (1105 aa)
	ENSCVAP00000022676	B30.2/SPRY domain-containing protein. (371 aa)
	ENSCVAP00000022640	Ig-like domain-containing protein. (192 aa)
	RCBTB1	RCC1 and BTB domain containing protein 1. (555 aa)
	ENSCVAP00000022361	B30.2/SPRY domain-containing protein. (245 aa)
	ENSCVAP00000021911	Uncharacterized protein. (497 aa)
	pold2	Polymerase (DNA directed), delta 2, regulatory subunit. (487 aa)
	ENSCVAP00000021667	Ubiquitin-like domain-containing protein. (83 aa)
	LOC107103864	Uncharacterized protein. (584 aa)
	ENSCVAP00000021241	RING-type domain-containing protein. (152 aa)
	ENSCVAP00000020379	B30.2/SPRY domain-containing protein. (223 aa)
	LOC107081714	Uncharacterized protein. (568 aa)
	ENSCVAP00000020218	Uncharacterized protein. (535 aa)
	ENSCVAP00000020078	Uncharacterized protein. (215 aa)
	usp10	Ubiquitin carboxyl-terminal hydrolase. (877 aa)
	ENSCVAP00000019698	PRY domain-containing protein. (270 aa)
	LOC107103945	Uncharacterized protein. (558 aa)
	pole3	Polymerase (DNA directed), epsilon 3 (p17 subunit). (146 aa)
	LOC107100955	Regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 1. (531 aa)
	ENSCVAP00000019159	Methionine sulfoxide reductase B1b. (252 aa)
	rfc2	Replication factor C (activator 1) 2. (373 aa)
	ENSCVAP00000019055	Uncharacterized protein. (256 aa)
	ENSCVAP00000018342	Uncharacterized protein. (405 aa)
	pold4	Si:dkey-28b4.7. (107 aa)
	pclaf	PCNA clamp associated factor. (116 aa)
	rfc4	Replication factor C (activator 1) 4. (357 aa)
	LOC107084015	Uncharacterized protein. (549 aa)
	ENSCVAP00000017046	Si:dkey-46i9.6. (362 aa)
	ENSCVAP00000016466	Uncharacterized protein. (164 aa)
	rpa1	Replication protein A subunit; As part of the heterotrimeric replication protein A complex (RPA/RP-A), binds and stabilizes single-stranded DNA intermediates, that form during DNA replication or upon DNA stress. It prevents their reannealing and in parallel, recruits and activates different proteins and complexes involved in DNA metabolism. Thereby, it plays an essential role both in DNA replication and the cellular response to DNA damage. (606 aa)
	pole4	Polymerase (DNA-directed), epsilon 4, accessory subunit. (129 aa)
	ENSCVAP00000015945	Uncharacterized protein. (262 aa)
	ENSCVAP00000015917	Uncharacterized protein. (269 aa)
	ENSCVAP00000015896	Uncharacterized protein. (247 aa)
	ENSCVAP00000015825	RING-type domain-containing protein. (186 aa)
	rev1	REV1 DNA directed polymerase. (1355 aa)
	LOC107095354	Regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2. (527 aa)
	ENSCVAP00000014920	Uncharacterized protein. (237 aa)
	ENSCVAP00000014696	Uncharacterized protein. (276 aa)
	rpa2	Replication protein A2. (278 aa)
	ENSCVAP00000014536	Uncharacterized protein. (242 aa)
	Polh	Polymerase (DNA directed), eta. (298 aa)
	LOC107083097	Ubiquitin specific peptidase 31; Belongs to the peptidase C19 family. (1283 aa)
	ENSCVAP00000013499	Uncharacterized protein. (267 aa)
	ENSCVAP00000013485	B30.2/SPRY domain-containing protein. (220 aa)
	ENSCVAP00000013477	Uncharacterized protein. (560 aa)
	ENSCVAP00000013425	Uncharacterized protein. (550 aa)
	LOC107087396	Uncharacterized protein. (555 aa)
	ENSCVAP00000013395	RING-type domain-containing protein. (366 aa)
	poli	Polymerase (DNA directed) iota. (618 aa)
	ENSCVAP00000012626	RING-type domain-containing protein. (243 aa)
	ENSCVAP00000012263	Uncharacterized protein. (277 aa)
	LOC107092059	Uncharacterized protein. (544 aa)
	LOC107088102	Replication protein A subunit; As part of the heterotrimeric replication protein A complex (RPA/RP-A), binds and stabilizes single-stranded DNA intermediates, that form during DNA replication or upon DNA stress. It prevents their reannealing and in parallel, recruits and activates different proteins and complexes involved in DNA metabolism. Thereby, it plays an essential role both in DNA replication and the cellular response to DNA damage. (670 aa)
	ENSCVAP00000010348	Uncharacterized protein. (551 aa)
	LOC107084252	Uncharacterized protein. (602 aa)
	pole	DNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family. (2017 aa)
	polk	Polymerase (DNA directed) kappa. (905 aa)
	LOC107087012	Uncharacterized protein. (550 aa)
	ENSCVAP00000008533	RING-type domain-containing protein. (123 aa)
	LOC107092444	Polymerase (DNA-directed), delta 3, accessory subunit. (439 aa)
	ENSCVAP00000007991	Uncharacterized protein. (555 aa)
	ENSCVAP00000007962	Uncharacterized protein. (558 aa)
	LOC107101371	Uncharacterized protein. (559 aa)
	ENSCVAP00000007679	RING-type domain-containing protein. (80 aa)
	ENSCVAP00000007674	Uncharacterized protein. (566 aa)
	ENSCVAP00000007420	RING-type domain-containing protein. (92 aa)
	ENSCVAP00000007415	RING-type domain-containing protein. (87 aa)
	ENSCVAP00000007378	B30.2/SPRY domain-containing protein. (188 aa)
	LOC107100204	Uncharacterized protein. (544 aa)
	LOC107094432	Uncharacterized protein. (545 aa)
	LOC107086707	Tripartite motif containing 25, like. (787 aa)
	ENSCVAP00000004903	Pyrin domain-containing protein. (255 aa)
	ENSCVAP00000004476	Ig-like domain-containing protein. (362 aa)
	LOC107096137	Ig-like domain-containing protein. (237 aa)
	LOC107096133	Uncharacterized protein. (552 aa)
	rps27a	Ribosomal protein S27a. (181 aa)
	ENSCVAP00000003378	Uncharacterized protein. (247 aa)
	ENSCVAP00000003106	Uncharacterized protein. (501 aa)
	ENSCVAP00000003062	Uncharacterized protein. (520 aa)
	pcna	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family. (260 aa)
	pole2	DNA polymerase epsilon subunit; Participates in DNA repair and in chromosomal DNA replication; Belongs to the DNA polymerase epsilon subunit B family. (529 aa)
	ENSCVAP00000001973	B30.2/SPRY domain-containing protein. (217 aa)
	ENSCVAP00000001971	B30.2/SPRY domain-containing protein. (325 aa)
	LOC107090604	Uncharacterized protein. (508 aa)
	LOC107090603	Uncharacterized protein. (497 aa)
	LOC107091169	ATPase family AAA domain containing 5a. (1526 aa)
	ENSCVAP00000001347	SCY domain-containing protein. (126 aa)
	ENSCVAP00000000787	Uncharacterized protein. (484 aa)
	rpa3	Replication protein A3. (122 aa)
	LOC107081712	FinTRIM family, member 67. (453 aa)
	ENSCVAP00000000775	Uncharacterized protein. (238 aa)

Your Current Organism:

Cyprinodon variegatus

NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCVAP00000001347	ENSCVAP00000016466	ENSCVAP00000001347	ENSCVAP00000016466	SCY domain-containing protein.	Uncharacterized protein.	0.454
ENSCVAP00000001347	ENSCVAP00000019055	ENSCVAP00000001347	ENSCVAP00000019055	SCY domain-containing protein.	Uncharacterized protein.	0.411
ENSCVAP00000001347	ENSCVAP00000019159	ENSCVAP00000001347	ENSCVAP00000019159	SCY domain-containing protein.	Methionine sulfoxide reductase B1b.	0.411
ENSCVAP00000001347	LOC107088102	ENSCVAP00000001347	ENSCVAP00000011210	SCY domain-containing protein.	Replication protein A subunit; As part of the heterotrimeric replication protein A complex (RPA/RP-A), binds and stabilizes single-stranded DNA intermediates, that form during DNA replication or upon DNA stress. It prevents their reannealing and in parallel, recruits and activates different proteins and complexes involved in DNA metabolism. Thereby, it plays an essential role both in DNA replication and the cellular response to DNA damage.	0.411
ENSCVAP00000001347	LOC107091169	ENSCVAP00000001347	ENSCVAP00000001775	SCY domain-containing protein.	ATPase family AAA domain containing 5a.	0.662
ENSCVAP00000001347	Polh	ENSCVAP00000001347	ENSCVAP00000013806	SCY domain-containing protein.	Polymerase (DNA directed), eta.	0.526
ENSCVAP00000001347	pcna	ENSCVAP00000001347	ENSCVAP00000002844	SCY domain-containing protein.	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.	0.639
ENSCVAP00000001347	pold1	ENSCVAP00000001347	ENSCVAP00000023009	SCY domain-containing protein.	DNA polymerase.	0.828
ENSCVAP00000001347	pold2	ENSCVAP00000001347	ENSCVAP00000021723	SCY domain-containing protein.	Polymerase (DNA directed), delta 2, regulatory subunit.	0.740
ENSCVAP00000001347	pole	ENSCVAP00000001347	ENSCVAP00000009733	SCY domain-containing protein.	DNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family.	0.972
ENSCVAP00000001347	pole2	ENSCVAP00000001347	ENSCVAP00000002721	SCY domain-containing protein.	DNA polymerase epsilon subunit; Participates in DNA repair and in chromosomal DNA replication; Belongs to the DNA polymerase epsilon subunit B family.	0.970
ENSCVAP00000001347	pole3	ENSCVAP00000001347	ENSCVAP00000019519	SCY domain-containing protein.	Polymerase (DNA directed), epsilon 3 (p17 subunit).	0.974
ENSCVAP00000001347	poli	ENSCVAP00000001347	ENSCVAP00000012951	SCY domain-containing protein.	Polymerase (DNA directed) iota.	0.526
ENSCVAP00000001347	polk	ENSCVAP00000001347	ENSCVAP00000009024	SCY domain-containing protein.	Polymerase (DNA directed) kappa.	0.654
ENSCVAP00000001347	rev1	ENSCVAP00000001347	ENSCVAP00000015540	SCY domain-containing protein.	REV1 DNA directed polymerase.	0.507
ENSCVAP00000001347	rfc1	ENSCVAP00000001347	ENSCVAP00000023708	SCY domain-containing protein.	Replication factor C subunit 1.	0.662
ENSCVAP00000001347	rfc2	ENSCVAP00000001347	ENSCVAP00000019065	SCY domain-containing protein.	Replication factor C (activator 1) 2.	0.687
ENSCVAP00000001347	rfc3	ENSCVAP00000001347	ENSCVAP00000027749	SCY domain-containing protein.	Replication factor C (activator 1) 3.	0.713
ENSCVAP00000001347	rfc4	ENSCVAP00000001347	ENSCVAP00000017062	SCY domain-containing protein.	Replication factor C (activator 1) 4.	0.694
ENSCVAP00000001347	rfc5	ENSCVAP00000001347	ENSCVAP00000029943	SCY domain-containing protein.	Replication factor C (activator 1) 5.	0.689