73 items (Cyprinodon variegatus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC107092016	Progestin and adipoQ receptor family member IIIb. (313 aa)
	CSDE1	Cold shock domain containing E1, RNA-binding. (907 aa)
	LOC107096283	Dual specificity phosphatase 19b. (203 aa)
	LOC107104990	A-Raf proto-oncogene, serine/threonine kinase. (584 aa)
	dusp8	Dual specificity phosphatase 8a. (679 aa)
	mob2	MOB kinase activator 2a. (253 aa)
	fnbp4	Formin binding protein 4. (878 aa)
	relch	RAB11 binding and LisH domain, coiled-coil and HEAT repeat containing. (1212 aa)
	ppp2r5a	Serine/threonine protein phosphatase 2A regulatory subunit; Belongs to the phosphatase 2A regulatory subunit. (511 aa)
	LOC107094527	Dual specificity phosphatase 2. (314 aa)
	styx	Serine/threonine/tyrosine interacting protein. (218 aa)
	LOC107100298	Serine/threonine protein phosphatase 2A regulatory subunit; Belongs to the phosphatase 2A regulatory subunit. (577 aa)
	dusp22	Uncharacterized protein. (95 aa)
	rps27a	Ribosomal protein S27a. (181 aa)
	LOC107095138	Zgc:55558. (187 aa)
	map2k1	Mitogen-activated protein kinase kinase 1; Belongs to the protein kinase superfamily. (395 aa)
	brap	BRCA1 associated protein. (586 aa)
	KRAS	V-Ki-ras2 Kirsten rat sarcoma viral oncogene homolog. (189 aa)
	LOC107090013	Dual specificity phosphatase 22b. (191 aa)
	dusp6	Dual specificity protein phosphatase; Belongs to the protein-tyrosine phosphatase family. Non- receptor class dual specificity subfamily. (384 aa)
	hras	HRas proto-oncogene, GTPase a. (189 aa)
	LOC107082582	Si:dkey-175m17.7. (879 aa)
	ppp5c	Serine/threonine-protein phosphatase. (513 aa)
	LOC107084853	Serine/threonine protein phosphatase 2A regulatory subunit; Belongs to the phosphatase 2A regulatory subunit. (415 aa)
	ssh3	Si:ch211-203d1.3. (599 aa)
	raf1	Raf-1 proto-oncogene, serine/threonine kinase a. (673 aa)
	LOC107097639	Slingshot protein phosphatase 2b. (1166 aa)
	LOC107101278	Mitogen-activated protein kinase 12b. (331 aa)
	LOC107085894	Serine/threonine-protein phosphatase. (309 aa)
	braf	B-Raf proto-oncogene, serine/threonine kinase. (727 aa)
	LOC107092021	Dual specificity protein phosphatase; Belongs to the protein-tyrosine phosphatase family. Non- receptor class dual specificity subfamily. (367 aa)
	LOC107101186	Mitogen-activated protein kinase. (379 aa)
	dusp19	Dual specificity phosphatase 19a. (211 aa)
	ENSCVAP00000014542	Protein kinase domain-containing protein. (105 aa)
	ENSCVAP00000014570	KA1 domain-containing protein. (78 aa)
	map2k2	Mitogen-activated protein kinase kinase 2a; Belongs to the protein kinase superfamily. (399 aa)
	LOC107084657	Serine/threonine-protein phosphatase. (309 aa)
	pebp1	Phosphatidylethanolamine binding protein 1. (187 aa)
	ppp4r4	Protein phosphatase 4, regulatory subunit 4. (749 aa)
	mapk1	Mitogen-activated protein kinase. (351 aa)
	ppp4r1	WRNPLPNID domain-containing protein. (975 aa)
	ENSCVAP00000016342	Uncharacterized protein. (118 aa)
	LOC107084561	Dual specificity protein phosphatase; Dual specificity phosphatase able to dephosphorylate phosphotyrosine, phosphoserine and phosphothreonine residues, with a preference for phosphotyrosine as a substrate. Belongs to the protein-tyrosine phosphatase family. Non- receptor class dual specificity subfamily. (210 aa)
	ENSCVAP00000016962	Uncharacterized protein. (90 aa)
	Ptprr	Tyrosine-protein phosphatase domain-containing protein. (140 aa)
	LOC107084082	Dual specificity phosphatase 22a; Belongs to the protein-tyrosine phosphatase family. Non- receptor class dual specificity subfamily. (191 aa)
	dusp16	Dual specificity phosphatase 16. (617 aa)
	paqr3	Progestin and adipoQ receptor family member IIIa. (343 aa)
	LOC107091255	Slingshot protein phosphatase 1b. (644 aa)
	LOC107100975	Uncharacterized protein. (420 aa)
	ssh1	Slingshot protein phosphatase 1a. (1025 aa)
	dusp1	Dual specificity protein phosphatase; Belongs to the protein-tyrosine phosphatase family. Non- receptor class dual specificity subfamily. (376 aa)
	dusp10	Dual specificity phosphatase 10; Belongs to the protein-tyrosine phosphatase family. Non- receptor class dual specificity subfamily. (472 aa)
	ENSCVAP00000021667	Ubiquitin-like domain-containing protein. (83 aa)
	kxd1	KxDL motif containing 1. (184 aa)
	ptpn3	Protein tyrosine phosphatase non-receptor type 3. (875 aa)
	PEBP4	Phosphatidylethanolamine binding protein 4. (194 aa)
	uba52	Ubiquitin A-52 residue ribosomal protein fusion product 1. (128 aa)
	LOC107088171	Dual specificity protein phosphatase; Belongs to the protein-tyrosine phosphatase family. Non- receptor class dual specificity subfamily. (393 aa)
	ssh2	Slingshot protein phosphatase 2a. (1092 aa)
	LOC107103198	Dual specificity protein phosphatase; Belongs to the protein-tyrosine phosphatase family. Non- receptor class dual specificity subfamily. (384 aa)
	LOC107088070	Serine/threonine protein phosphatase 2A regulatory subunit; Belongs to the phosphatase 2A regulatory subunit. (536 aa)
	LOC107082492	Mitogen-activated protein kinase; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family. MAP kinase subfamily. (361 aa)
	ppp2r5b	Serine/threonine protein phosphatase 2A regulatory subunit; Belongs to the phosphatase 2A regulatory subunit. (461 aa)
	ENSCVAP00000029452	Protein kinase domain-containing protein. (108 aa)
	dusp12	Dual specificity phosphatase 12. (303 aa)
	ppp2r1b	Protein phosphatase 2, regulatory subunit A, beta b. (589 aa)
	LOC107083006	Uncharacterized protein; Belongs to the protein-tyrosine phosphatase family. Non- receptor class dual specificity subfamily. (198 aa)
	mark3	Non-specific serine/threonine protein kinase. (760 aa)
	ENSCVAP00000030603	Protein phosphatase 2, regulatory subunit B', delta. (281 aa)
	dusp28	Dual specificity phosphatase 28. (149 aa)
	dusp5	Dual specificity protein phosphatase; Belongs to the protein-tyrosine phosphatase family. Non- receptor class dual specificity subfamily. (376 aa)
	ppp2ca	Serine/threonine-protein phosphatase. (314 aa)

Your Current Organism:

Cyprinodon variegatus

NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CSDE1	ENSCVAP00000021667	ENSCVAP00000000427	ENSCVAP00000021667	Cold shock domain containing E1, RNA-binding.	Ubiquitin-like domain-containing protein.	0.425
CSDE1	LOC107101186	ENSCVAP00000000427	ENSCVAP00000013006	Cold shock domain containing E1, RNA-binding.	Mitogen-activated protein kinase.	0.445
CSDE1	LOC107104990	ENSCVAP00000000427	ENSCVAP00000001560	Cold shock domain containing E1, RNA-binding.	A-Raf proto-oncogene, serine/threonine kinase.	0.756
CSDE1	PEBP4	ENSCVAP00000000427	ENSCVAP00000025365	Cold shock domain containing E1, RNA-binding.	Phosphatidylethanolamine binding protein 4.	0.477
CSDE1	braf	ENSCVAP00000000427	ENSCVAP00000012270	Cold shock domain containing E1, RNA-binding.	B-Raf proto-oncogene, serine/threonine kinase.	0.756
CSDE1	brap	ENSCVAP00000000427	ENSCVAP00000004714	Cold shock domain containing E1, RNA-binding.	BRCA1 associated protein.	0.517
CSDE1	map2k1	ENSCVAP00000000427	ENSCVAP00000004697	Cold shock domain containing E1, RNA-binding.	Mitogen-activated protein kinase kinase 1; Belongs to the protein kinase superfamily.	0.598
CSDE1	map2k2	ENSCVAP00000000427	ENSCVAP00000014852	Cold shock domain containing E1, RNA-binding.	Mitogen-activated protein kinase kinase 2a; Belongs to the protein kinase superfamily.	0.598
CSDE1	mapk1	ENSCVAP00000000427	ENSCVAP00000015363	Cold shock domain containing E1, RNA-binding.	Mitogen-activated protein kinase.	0.445
CSDE1	pebp1	ENSCVAP00000000427	ENSCVAP00000015279	Cold shock domain containing E1, RNA-binding.	Phosphatidylethanolamine binding protein 1.	0.530
CSDE1	ppp2r1b	ENSCVAP00000000427	ENSCVAP00000029761	Cold shock domain containing E1, RNA-binding.	Protein phosphatase 2, regulatory subunit A, beta b.	0.458
CSDE1	raf1	ENSCVAP00000000427	ENSCVAP00000010648	Cold shock domain containing E1, RNA-binding.	Raf-1 proto-oncogene, serine/threonine kinase a.	0.756
CSDE1	rps27a	ENSCVAP00000000427	ENSCVAP00000003612	Cold shock domain containing E1, RNA-binding.	Ribosomal protein S27a.	0.494
CSDE1	uba52	ENSCVAP00000000427	ENSCVAP00000025559	Cold shock domain containing E1, RNA-binding.	Ubiquitin A-52 residue ribosomal protein fusion product 1.	0.504
ENSCVAP00000016342	ENSCVAP00000021667	ENSCVAP00000016342	ENSCVAP00000021667	Uncharacterized protein.	Ubiquitin-like domain-containing protein.	0.474
ENSCVAP00000016342	LOC107084657	ENSCVAP00000016342	ENSCVAP00000014874	Uncharacterized protein.	Serine/threonine-protein phosphatase.	0.750
ENSCVAP00000016342	LOC107084853	ENSCVAP00000016342	ENSCVAP00000008956	Uncharacterized protein.	Serine/threonine protein phosphatase 2A regulatory subunit; Belongs to the phosphatase 2A regulatory subunit.	0.541
ENSCVAP00000016342	LOC107085894	ENSCVAP00000016342	ENSCVAP00000011363	Uncharacterized protein.	Serine/threonine-protein phosphatase.	0.750
ENSCVAP00000016342	fnbp4	ENSCVAP00000016342	ENSCVAP00000002129	Uncharacterized protein.	Formin binding protein 4.	0.718
ENSCVAP00000016342	ppp2ca	ENSCVAP00000016342	ENSCVAP00000032759	Uncharacterized protein.	Serine/threonine-protein phosphatase.	0.750