78 items (Cyprinodon variegatus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC107088377	Tyrosine-protein phosphatase non-receptor type. (405 aa)
	CSDE1	Cold shock domain containing E1, RNA-binding. (907 aa)
	LOC107089466	Uncharacterized protein. (1506 aa)
	LOC107081972	SH3-domain GRB2-like 1b. (368 aa)
	lama4	Laminin, alpha 4. (1711 aa)
	ENSCVAP00000004650	DHR-2 domain-containing protein; Belongs to the DOCK family. (216 aa)
	ENSCVAP00000004661	Uncharacterized protein. (402 aa)
	LOC107095138	Zgc:55558. (187 aa)
	KRAS	V-Ki-ras2 Kirsten rat sarcoma viral oncogene homolog. (189 aa)
	ranbp10	Uncharacterized protein. (117 aa)
	ENSCVAP00000004763	Laminin N-terminal domain-containing protein. (255 aa)
	LOC107096811	Laminin, gamma 3. (1295 aa)
	tns4	SH2 domain-containing protein. (582 aa)
	PTPN2	Tyrosine-protein phosphatase non-receptor type. (410 aa)
	LOC107103249	Uncharacterized protein. (185 aa)
	hras	HRas proto-oncogene, GTPase a. (189 aa)
	hgs	Hepatocyte growth factor-regulated tyrosine kinase substrate. (772 aa)
	met	MET proto-oncogene, receptor tyrosine kinase. (1414 aa)
	ENSCVAP00000008612	Fibrillar collagen NC1 domain-containing protein. (112 aa)
	rab4a	RAB4a, member RAS oncogene family. (238 aa)
	SRC	Tyrosine-protein kinase. (551 aa)
	grb2	Growth factor receptor-bound protein 2b. (217 aa)
	pik3ca	Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit. (1004 aa)
	ENSCVAP00000009772	Laminin N-terminal domain-containing protein. (71 aa)
	lamc2	Laminin, gamma 2. (1128 aa)
	LOC107096572	SH3 domain containing GRB2 like 2a, endophilin A1. (363 aa)
	ENSCVAP00000010907	Dedicator of cytokinesis 7; Belongs to the DOCK family. (594 aa)
	ENSCVAP00000011004	Uncharacterized protein. (411 aa)
	stam	Signal transducing adaptor molecule (SH3 domain and ITAM motif) 1. (521 aa)
	crk	CRK proto-oncogene, adaptor protein. (310 aa)
	LOC107092624	RAN binding protein 10. (552 aa)
	ENSCVAP00000012653	Fibrillar collagen NC1 domain-containing protein. (112 aa)
	ENSCVAP00000012955	Laminin, beta 1b. (797 aa)
	rapgef1	Rap guanine nucleotide exchange factor (GEF) 1b. (1217 aa)
	LOC107090869	ADP-ribosylation factor 6b; Belongs to the small GTPase superfamily. Arf family. (175 aa)
	LOC107098202	Uncharacterized protein. (860 aa)
	LOC107103484	Uncharacterized protein. (449 aa)
	sh3kbp1	Uncharacterized protein. (604 aa)
	rps27a	Ribosomal protein S27a. (181 aa)
	fndc3b	Fibronectin type III domain containing 3Ba. (1207 aa)
	LOC107102211	Zgc:158659; Belongs to the PI3/PI4-kinase family. (1070 aa)
	lama5	Laminin, alpha 5. (3308 aa)
	LOC107090729	Uncharacterized protein. (207 aa)
	rap1b	Uncharacterized protein. (184 aa)
	ENSCVAP00000017554	Uncharacterized protein. (680 aa)
	ENSCVAP00000017950	VHS domain-containing protein. (109 aa)
	ENSCVAP00000018217	Uncharacterized protein. (113 aa)
	LOC107086212	Tensin 1b. (1764 aa)
	eps15	Epidermal growth factor receptor pathway substrate 15. (1081 aa)
	shc1	SHC (Src homology 2 domain containing) transforming protein 1. (443 aa)
	ENSCVAP00000021109	Uncharacterized protein. (281 aa)
	ENSCVAP00000021287	Uncharacterized protein. (246 aa)
	ENSCVAP00000021953	Fibrillar collagen NC1 domain-containing protein. (117 aa)
	LOC107089396	PH domain-containing protein. (761 aa)
	sh3gl2	Uncharacterized protein. (351 aa)
	cbl	Cbl proto-oncogene, E3 ubiquitin protein ligase. (952 aa)
	LOC107081852	Uncharacterized protein. (318 aa)
	PIK3CA	Phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha; Belongs to the PI3/PI4-kinase family. (1038 aa)
	lamc1	Laminin, gamma 1. (1610 aa)
	lamb1	Laminin, beta 1a. (1800 aa)
	ranbp9	RAN binding protein 9. (598 aa)
	ENSCVAP00000025549	Uncharacterized protein. (179 aa)
	uba52	Ubiquitin A-52 residue ribosomal protein fusion product 1. (128 aa)
	lamb2	Laminin, beta 2 (laminin S). (1624 aa)
	ENSCVAP00000026684	SH2 domain-containing protein. (869 aa)
	crkl	V-crk avian sarcoma virus CT10 oncogene homolog-like. (308 aa)
	spint1	Serine peptidase inhibitor, Kunitz type 1 a. (496 aa)
	LOC107083535	Cbl proto-oncogene C, E3 ubiquitin protein ligase. (566 aa)
	lrig1	Leucine-rich repeats and immunoglobulin-like domains 1. (1035 aa)
	sh3d21	SH3 domain containing 21. (483 aa)
	fndc3a	Fibronectin type III domain containing 3A. (1234 aa)
	ENSCVAP00000030408	Uncharacterized protein. (282 aa)
	LOC107094172	RAB4B, member RAS oncogene family. (201 aa)
	LOC107090730	Tyrosine-protein phosphatase non-receptor type. (434 aa)
	stam2	Signal transducing adaptor molecule (SH3 domain and ITAM motif) 2. (484 aa)
	hpn	Hepsin; Belongs to the peptidase S1 family. (410 aa)
	ENSCVAP00000032168	Uncharacterized protein. (475 aa)
	Lama3	Uncharacterized protein. (542 aa)

Your Current Organism:

Cyprinodon variegatus

NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CSDE1	LOC107102211	ENSCVAP00000000427	ENSCVAP00000016437	Cold shock domain containing E1, RNA-binding.	Zgc:158659; Belongs to the PI3/PI4-kinase family.	0.524
CSDE1	PIK3CA	ENSCVAP00000000427	ENSCVAP00000024569	Cold shock domain containing E1, RNA-binding.	Phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha; Belongs to the PI3/PI4-kinase family.	0.524
CSDE1	grb2	ENSCVAP00000000427	ENSCVAP00000009535	Cold shock domain containing E1, RNA-binding.	Growth factor receptor-bound protein 2b.	0.684
CSDE1	met	ENSCVAP00000000427	ENSCVAP00000007194	Cold shock domain containing E1, RNA-binding.	MET proto-oncogene, receptor tyrosine kinase.	0.633
CSDE1	pik3ca	ENSCVAP00000000427	ENSCVAP00000009741	Cold shock domain containing E1, RNA-binding.	Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit.	0.524
CSDE1	rapgef1	ENSCVAP00000000427	ENSCVAP00000013070	Cold shock domain containing E1, RNA-binding.	Rap guanine nucleotide exchange factor (GEF) 1b.	0.447
CSDE1	rps27a	ENSCVAP00000000427	ENSCVAP00000003612	Cold shock domain containing E1, RNA-binding.	Ribosomal protein S27a.	0.494
CSDE1	shc1	ENSCVAP00000000427	ENSCVAP00000019790	Cold shock domain containing E1, RNA-binding.	SHC (Src homology 2 domain containing) transforming protein 1.	0.465
CSDE1	uba52	ENSCVAP00000000427	ENSCVAP00000025559	Cold shock domain containing E1, RNA-binding.	Ubiquitin A-52 residue ribosomal protein fusion product 1.	0.504
ENSCVAP00000004650	ENSCVAP00000004661	ENSCVAP00000004650	ENSCVAP00000004661	DHR-2 domain-containing protein; Belongs to the DOCK family.	Uncharacterized protein.	0.918
ENSCVAP00000004650	ENSCVAP00000010907	ENSCVAP00000004650	ENSCVAP00000010907	DHR-2 domain-containing protein; Belongs to the DOCK family.	Dedicator of cytokinesis 7; Belongs to the DOCK family.	0.920
ENSCVAP00000004650	ENSCVAP00000011004	ENSCVAP00000004650	ENSCVAP00000011004	DHR-2 domain-containing protein; Belongs to the DOCK family.	Uncharacterized protein.	0.918
ENSCVAP00000004650	LOC107089396	ENSCVAP00000004650	ENSCVAP00000022161	DHR-2 domain-containing protein; Belongs to the DOCK family.	PH domain-containing protein.	0.412
ENSCVAP00000004650	grb2	ENSCVAP00000004650	ENSCVAP00000009535	DHR-2 domain-containing protein; Belongs to the DOCK family.	Growth factor receptor-bound protein 2b.	0.412
ENSCVAP00000004650	met	ENSCVAP00000004650	ENSCVAP00000007194	DHR-2 domain-containing protein; Belongs to the DOCK family.	MET proto-oncogene, receptor tyrosine kinase.	0.495
ENSCVAP00000004661	ENSCVAP00000004650	ENSCVAP00000004661	ENSCVAP00000004650	Uncharacterized protein.	DHR-2 domain-containing protein; Belongs to the DOCK family.	0.918
ENSCVAP00000004661	ENSCVAP00000010907	ENSCVAP00000004661	ENSCVAP00000010907	Uncharacterized protein.	Dedicator of cytokinesis 7; Belongs to the DOCK family.	0.940
ENSCVAP00000004661	LOC107089396	ENSCVAP00000004661	ENSCVAP00000022161	Uncharacterized protein.	PH domain-containing protein.	0.412
ENSCVAP00000004661	grb2	ENSCVAP00000004661	ENSCVAP00000009535	Uncharacterized protein.	Growth factor receptor-bound protein 2b.	0.412
ENSCVAP00000004661	met	ENSCVAP00000004661	ENSCVAP00000007194	Uncharacterized protein.	MET proto-oncogene, receptor tyrosine kinase.	0.495