20 items (Cyprinodon variegatus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	lama4	Laminin, alpha 4. (1711 aa)
	ENSCVAP00000012955	Laminin, beta 1b. (797 aa)
	ENSCVAP00000025549	Uncharacterized protein. (179 aa)
	lamb1	Laminin, beta 1a. (1800 aa)
	ENSCVAP00000004763	Laminin N-terminal domain-containing protein. (255 aa)
	LOC107096811	Laminin, gamma 3. (1295 aa)
	met	MET proto-oncogene, receptor tyrosine kinase. (1414 aa)
	ENSCVAP00000008612	Fibrillar collagen NC1 domain-containing protein. (112 aa)
	SRC	Tyrosine-protein kinase. (551 aa)
	ENSCVAP00000009772	Laminin N-terminal domain-containing protein. (71 aa)
	lamc2	Laminin, gamma 2. (1128 aa)
	ENSCVAP00000012653	Fibrillar collagen NC1 domain-containing protein. (112 aa)
	lamc1	Laminin, gamma 1. (1610 aa)
	ENSCVAP00000021953	Fibrillar collagen NC1 domain-containing protein. (117 aa)
	ENSCVAP00000017554	Uncharacterized protein. (680 aa)
	lama5	Laminin, alpha 5. (3308 aa)
	fndc3b	Fibronectin type III domain containing 3Ba. (1207 aa)
	lamb2	Laminin, beta 2 (laminin S). (1624 aa)
	fndc3a	Fibronectin type III domain containing 3A. (1234 aa)
	Lama3	Uncharacterized protein. (542 aa)

Your Current Organism:

Cyprinodon variegatus

NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCVAP00000004763	ENSCVAP00000009772	ENSCVAP00000004763	ENSCVAP00000009772	Laminin N-terminal domain-containing protein.	Laminin N-terminal domain-containing protein.	0.655
ENSCVAP00000004763	ENSCVAP00000012955	ENSCVAP00000004763	ENSCVAP00000012955	Laminin N-terminal domain-containing protein.	Laminin, beta 1b.	0.697
ENSCVAP00000004763	ENSCVAP00000017554	ENSCVAP00000004763	ENSCVAP00000017554	Laminin N-terminal domain-containing protein.	Uncharacterized protein.	0.521
ENSCVAP00000004763	LOC107096811	ENSCVAP00000004763	ENSCVAP00000004784	Laminin N-terminal domain-containing protein.	Laminin, gamma 3.	0.894
ENSCVAP00000004763	Lama3	ENSCVAP00000004763	ENSCVAP00000032634	Laminin N-terminal domain-containing protein.	Uncharacterized protein.	0.750
ENSCVAP00000004763	lama4	ENSCVAP00000004763	ENSCVAP00000003033	Laminin N-terminal domain-containing protein.	Laminin, alpha 4.	0.750
ENSCVAP00000004763	lama5	ENSCVAP00000004763	ENSCVAP00000016620	Laminin N-terminal domain-containing protein.	Laminin, alpha 5.	0.750
ENSCVAP00000004763	lamb1	ENSCVAP00000004763	ENSCVAP00000025117	Laminin N-terminal domain-containing protein.	Laminin, beta 1a.	0.678
ENSCVAP00000004763	lamb2	ENSCVAP00000004763	ENSCVAP00000025754	Laminin N-terminal domain-containing protein.	Laminin, beta 2 (laminin S).	0.678
ENSCVAP00000004763	lamc2	ENSCVAP00000004763	ENSCVAP00000009810	Laminin N-terminal domain-containing protein.	Laminin, gamma 2.	0.446
ENSCVAP00000009772	ENSCVAP00000004763	ENSCVAP00000009772	ENSCVAP00000004763	Laminin N-terminal domain-containing protein.	Laminin N-terminal domain-containing protein.	0.655
ENSCVAP00000009772	LOC107096811	ENSCVAP00000009772	ENSCVAP00000004784	Laminin N-terminal domain-containing protein.	Laminin, gamma 3.	0.655
ENSCVAP00000009772	Lama3	ENSCVAP00000009772	ENSCVAP00000032634	Laminin N-terminal domain-containing protein.	Uncharacterized protein.	0.627
ENSCVAP00000009772	lama4	ENSCVAP00000009772	ENSCVAP00000003033	Laminin N-terminal domain-containing protein.	Laminin, alpha 4.	0.627
ENSCVAP00000009772	lama5	ENSCVAP00000009772	ENSCVAP00000016620	Laminin N-terminal domain-containing protein.	Laminin, alpha 5.	0.627
ENSCVAP00000009772	lamc1	ENSCVAP00000009772	ENSCVAP00000025036	Laminin N-terminal domain-containing protein.	Laminin, gamma 1.	0.655
ENSCVAP00000009772	lamc2	ENSCVAP00000009772	ENSCVAP00000009810	Laminin N-terminal domain-containing protein.	Laminin, gamma 2.	0.655
ENSCVAP00000012955	ENSCVAP00000004763	ENSCVAP00000012955	ENSCVAP00000004763	Laminin, beta 1b.	Laminin N-terminal domain-containing protein.	0.697
ENSCVAP00000012955	ENSCVAP00000017554	ENSCVAP00000012955	ENSCVAP00000017554	Laminin, beta 1b.	Uncharacterized protein.	0.433
ENSCVAP00000012955	LOC107096811	ENSCVAP00000012955	ENSCVAP00000004784	Laminin, beta 1b.	Laminin, gamma 3.	0.678