17 items (Cyprinodon variegatus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	fndc3b	Fibronectin type III domain containing 3Ba. (1207 aa)
	SRC	Tyrosine-protein kinase. (551 aa)
	CSNK2A2	Casein kinase 2 alpha 2; Belongs to the protein kinase superfamily. (350 aa)
	LOC107089933	PGAM family member 5, serine/threonine protein phosphatase, mitochondrial. (301 aa)
	LOC107102531	Casein kinase II subunit beta; Plays a complex role in regulating the basal catalytic activity of the alpha subunit; Belongs to the casein kinase 2 subunit beta family. (255 aa)
	map1lc3a	Microtubule-associated protein 1 light chain 3 alpha. (121 aa)
	LOC107082777	Casein kinase 2, alpha prime polypeptide a; Belongs to the protein kinase superfamily. (356 aa)
	atg12	Ubiquitin-like protein ATG12; Ubiquitin-like protein involved in autophagic vesicle formation; Belongs to the ATG12 family. (117 aa)
	LOC107090965	Unc-51 like autophagy activating kinase 1. (1024 aa)
	ulk1	Unc-51 like autophagy activating kinase 1a. (785 aa)
	fndc3a	Fibronectin type III domain containing 3A. (1234 aa)
	map1lc3b	Microtubule-associated protein 1 light chain 3 beta. (137 aa)
	LOC107102542	Zgc:86598; Belongs to the protein kinase superfamily. (412 aa)
	LOC107086178	Casein kinase II subunit beta; Plays a complex role in regulating the basal catalytic activity of the alpha subunit; Belongs to the casein kinase 2 subunit beta family. (215 aa)
	ulk2	Unc-51 like autophagy activating kinase 2. (889 aa)
	fundc1	FUN14 domain containing 1. (152 aa)
	atg5	Autophagy protein 5; Involved in autophagic vesicle formation. (275 aa)

Your Current Organism:

Cyprinodon variegatus

NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CSNK2A2	LOC107082777	ENSCVAP00000007618	ENSCVAP00000002529	Casein kinase 2 alpha 2; Belongs to the protein kinase superfamily.	Casein kinase 2, alpha prime polypeptide a; Belongs to the protein kinase superfamily.	0.901
CSNK2A2	LOC107086178	ENSCVAP00000007618	ENSCVAP00000021071	Casein kinase 2 alpha 2; Belongs to the protein kinase superfamily.	Casein kinase II subunit beta; Plays a complex role in regulating the basal catalytic activity of the alpha subunit; Belongs to the casein kinase 2 subunit beta family.	0.987
CSNK2A2	LOC107102531	ENSCVAP00000007618	ENSCVAP00000006810	Casein kinase 2 alpha 2; Belongs to the protein kinase superfamily.	Casein kinase II subunit beta; Plays a complex role in regulating the basal catalytic activity of the alpha subunit; Belongs to the casein kinase 2 subunit beta family.	0.881
CSNK2A2	LOC107102542	ENSCVAP00000007618	ENSCVAP00000024300	Casein kinase 2 alpha 2; Belongs to the protein kinase superfamily.	Zgc:86598; Belongs to the protein kinase superfamily.	0.950
CSNK2A2	fundc1	ENSCVAP00000007618	ENSCVAP00000017168	Casein kinase 2 alpha 2; Belongs to the protein kinase superfamily.	FUN14 domain containing 1.	0.962
LOC107082777	CSNK2A2	ENSCVAP00000002529	ENSCVAP00000007618	Casein kinase 2, alpha prime polypeptide a; Belongs to the protein kinase superfamily.	Casein kinase 2 alpha 2; Belongs to the protein kinase superfamily.	0.901
LOC107082777	LOC107086178	ENSCVAP00000002529	ENSCVAP00000021071	Casein kinase 2, alpha prime polypeptide a; Belongs to the protein kinase superfamily.	Casein kinase II subunit beta; Plays a complex role in regulating the basal catalytic activity of the alpha subunit; Belongs to the casein kinase 2 subunit beta family.	0.987
LOC107082777	LOC107102531	ENSCVAP00000002529	ENSCVAP00000006810	Casein kinase 2, alpha prime polypeptide a; Belongs to the protein kinase superfamily.	Casein kinase II subunit beta; Plays a complex role in regulating the basal catalytic activity of the alpha subunit; Belongs to the casein kinase 2 subunit beta family.	0.881
LOC107082777	LOC107102542	ENSCVAP00000002529	ENSCVAP00000024300	Casein kinase 2, alpha prime polypeptide a; Belongs to the protein kinase superfamily.	Zgc:86598; Belongs to the protein kinase superfamily.	0.950
LOC107082777	fundc1	ENSCVAP00000002529	ENSCVAP00000017168	Casein kinase 2, alpha prime polypeptide a; Belongs to the protein kinase superfamily.	FUN14 domain containing 1.	0.962
LOC107086178	CSNK2A2	ENSCVAP00000021071	ENSCVAP00000007618	Casein kinase II subunit beta; Plays a complex role in regulating the basal catalytic activity of the alpha subunit; Belongs to the casein kinase 2 subunit beta family.	Casein kinase 2 alpha 2; Belongs to the protein kinase superfamily.	0.987
LOC107086178	LOC107082777	ENSCVAP00000021071	ENSCVAP00000002529	Casein kinase II subunit beta; Plays a complex role in regulating the basal catalytic activity of the alpha subunit; Belongs to the casein kinase 2 subunit beta family.	Casein kinase 2, alpha prime polypeptide a; Belongs to the protein kinase superfamily.	0.987
LOC107086178	LOC107102542	ENSCVAP00000021071	ENSCVAP00000024300	Casein kinase II subunit beta; Plays a complex role in regulating the basal catalytic activity of the alpha subunit; Belongs to the casein kinase 2 subunit beta family.	Zgc:86598; Belongs to the protein kinase superfamily.	0.987
LOC107086178	fundc1	ENSCVAP00000021071	ENSCVAP00000017168	Casein kinase II subunit beta; Plays a complex role in regulating the basal catalytic activity of the alpha subunit; Belongs to the casein kinase 2 subunit beta family.	FUN14 domain containing 1.	0.960
LOC107089933	fundc1	ENSCVAP00000007134	ENSCVAP00000017168	PGAM family member 5, serine/threonine protein phosphatase, mitochondrial.	FUN14 domain containing 1.	0.996
LOC107090965	atg12	ENSCVAP00000010495	ENSCVAP00000000340	Unc-51 like autophagy activating kinase 1.	Ubiquitin-like protein ATG12; Ubiquitin-like protein involved in autophagic vesicle formation; Belongs to the ATG12 family.	0.870
LOC107090965	atg5	ENSCVAP00000010495	ENSCVAP00000016194	Unc-51 like autophagy activating kinase 1.	Autophagy protein 5; Involved in autophagic vesicle formation.	0.869
LOC107090965	fundc1	ENSCVAP00000010495	ENSCVAP00000017168	Unc-51 like autophagy activating kinase 1.	FUN14 domain containing 1.	0.969
LOC107090965	map1lc3a	ENSCVAP00000010495	ENSCVAP00000012644	Unc-51 like autophagy activating kinase 1.	Microtubule-associated protein 1 light chain 3 alpha.	0.744
LOC107090965	map1lc3b	ENSCVAP00000010495	ENSCVAP00000027491	Unc-51 like autophagy activating kinase 1.	Microtubule-associated protein 1 light chain 3 beta.	0.744