49 items (Cyprinodon variegatus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	arid1b	AT rich interactive domain 1B (SWI1-like). (1902 aa)
	LOC107092814	Chromobox homolog 8a (Pc class homolog, Drosophila). (340 aa)
	LOC107082787	Uncharacterized protein. (1572 aa)
	LOC107082777	Casein kinase 2, alpha prime polypeptide a; Belongs to the protein kinase superfamily. (356 aa)
	cbx6	Chromobox homolog 6a. (488 aa)
	LOC107104794	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1. (457 aa)
	auts2	Activator of transcription and developmental regulator AUTS2 a. (802 aa)
	LOC107085518	Chromobox homolog 8b. (387 aa)
	ENSCVAP00000006163	Bmi1 polycomb ring finger oncogene 1a. (332 aa)
	LOC107102531	Casein kinase II subunit beta; Plays a complex role in regulating the basal catalytic activity of the alpha subunit; Belongs to the casein kinase 2 subunit beta family. (255 aa)
	CSNK2A2	Casein kinase 2 alpha 2; Belongs to the protein kinase superfamily. (350 aa)
	smarcd3	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3b. (519 aa)
	RING1	Ring finger protein 1. (389 aa)
	ENSCVAP00000013511	Si:dkey-33o22.1. (93 aa)
	LOC107096512	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2. (1346 aa)
	ENSCVAP00000014015	Bromo domain-containing protein. (215 aa)
	smarcd2	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 2. (501 aa)
	LOC107092995	ARID domain-containing protein. (1539 aa)
	cbfb	Core-binding factor subunit beta. (188 aa)
	LOC107089790	AT rich interactive domain 1Ab (SWI-like). (2272 aa)
	scml2	SAM domain-containing protein. (694 aa)
	LOC107085885	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1b. (943 aa)
	LOC107103645	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1; Belongs to the SNF5 family. (373 aa)
	ep300	E1A binding protein p300 b. (2766 aa)
	LOC107102542	Zgc:86598; Belongs to the protein kinase superfamily. (412 aa)
	LOC107093928	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1; Belongs to the SNF5 family. (368 aa)
	SMARCE1	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1. (409 aa)
	actl6a	Actin-like 6A; Belongs to the actin family. (429 aa)
	LOC107089316	Chromobox homolog 2 (Drosophila Pc class). (530 aa)
	LOC107087675	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4a. (1614 aa)
	cbx4	Chromobox 4. (565 aa)
	LOC107096119	Polybromo 1, like. (1585 aa)
	LOC107085647	Polybromo 1. (1535 aa)
	LOC107086178	Casein kinase II subunit beta; Plays a complex role in regulating the basal catalytic activity of the alpha subunit; Belongs to the casein kinase 2 subunit beta family. (215 aa)
	LOC107092841	Chromobox homolog 4 (Pc class homolog, Drosophila). (549 aa)
	LOC107092878	E1A binding protein p300 a. (2648 aa)
	LOC107082121	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 2. (1050 aa)
	LOC107089015	Uncharacterized protein. (901 aa)
	rnf2	Ring finger protein 2. (342 aa)
	LOC107102158	Scm polycomb group protein like 2. (614 aa)
	arid1a	AT rich interactive domain 1Aa (SWI-like). (2283 aa)
	LOC107082907	Uncharacterized protein. (467 aa)
	rybp	RING1 and YY1 binding protein b. (268 aa)
	pcgf5	Polycomb group ring finger 5a. (245 aa)
	smarcc1	Uncharacterized protein. (1143 aa)
	smarcd1	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1. (515 aa)
	SCMH1	Scm polycomb group protein homolog 1. (724 aa)
	arid2	AT rich interactive domain 2 (ARID, RFX-like). (1628 aa)
	LOC107098178	Runt-related transcription factor. (470 aa)

Your Current Organism:

Cyprinodon variegatus

NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow

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structured XML interaction data, according to the 'PSI-MI' data standard

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CSNK2A2	ENSCVAP00000013511	ENSCVAP00000007618	ENSCVAP00000013511	Casein kinase 2 alpha 2; Belongs to the protein kinase superfamily.	Si:dkey-33o22.1.	0.493
CSNK2A2	LOC107082777	ENSCVAP00000007618	ENSCVAP00000002529	Casein kinase 2 alpha 2; Belongs to the protein kinase superfamily.	Casein kinase 2, alpha prime polypeptide a; Belongs to the protein kinase superfamily.	0.901
CSNK2A2	LOC107086178	ENSCVAP00000007618	ENSCVAP00000021071	Casein kinase 2 alpha 2; Belongs to the protein kinase superfamily.	Casein kinase II subunit beta; Plays a complex role in regulating the basal catalytic activity of the alpha subunit; Belongs to the casein kinase 2 subunit beta family.	0.987
CSNK2A2	LOC107102531	ENSCVAP00000007618	ENSCVAP00000006810	Casein kinase 2 alpha 2; Belongs to the protein kinase superfamily.	Casein kinase II subunit beta; Plays a complex role in regulating the basal catalytic activity of the alpha subunit; Belongs to the casein kinase 2 subunit beta family.	0.881
CSNK2A2	LOC107102542	ENSCVAP00000007618	ENSCVAP00000024300	Casein kinase 2 alpha 2; Belongs to the protein kinase superfamily.	Zgc:86598; Belongs to the protein kinase superfamily.	0.950
CSNK2A2	RING1	ENSCVAP00000007618	ENSCVAP00000008579	Casein kinase 2 alpha 2; Belongs to the protein kinase superfamily.	Ring finger protein 1.	0.519
CSNK2A2	auts2	ENSCVAP00000007618	ENSCVAP00000005283	Casein kinase 2 alpha 2; Belongs to the protein kinase superfamily.	Activator of transcription and developmental regulator AUTS2 a.	0.493
CSNK2A2	cbfb	ENSCVAP00000007618	ENSCVAP00000030542	Casein kinase 2 alpha 2; Belongs to the protein kinase superfamily.	Core-binding factor subunit beta.	0.467
CSNK2A2	pcgf5	ENSCVAP00000007618	ENSCVAP00000016686	Casein kinase 2 alpha 2; Belongs to the protein kinase superfamily.	Polycomb group ring finger 5a.	0.631
CSNK2A2	rnf2	ENSCVAP00000007618	ENSCVAP00000018052	Casein kinase 2 alpha 2; Belongs to the protein kinase superfamily.	Ring finger protein 2.	0.519
CSNK2A2	rybp	ENSCVAP00000007618	ENSCVAP00000017014	Casein kinase 2 alpha 2; Belongs to the protein kinase superfamily.	RING1 and YY1 binding protein b.	0.441
ENSCVAP00000006163	ENSCVAP00000013511	ENSCVAP00000006163	ENSCVAP00000013511	Bmi1 polycomb ring finger oncogene 1a.	Si:dkey-33o22.1.	0.498
ENSCVAP00000006163	LOC107082907	ENSCVAP00000006163	ENSCVAP00000017101	Bmi1 polycomb ring finger oncogene 1a.	Uncharacterized protein.	0.741
ENSCVAP00000006163	LOC107085518	ENSCVAP00000006163	ENSCVAP00000005519	Bmi1 polycomb ring finger oncogene 1a.	Chromobox homolog 8b.	0.861
ENSCVAP00000006163	LOC107086178	ENSCVAP00000006163	ENSCVAP00000021071	Bmi1 polycomb ring finger oncogene 1a.	Casein kinase II subunit beta; Plays a complex role in regulating the basal catalytic activity of the alpha subunit; Belongs to the casein kinase 2 subunit beta family.	0.515
ENSCVAP00000006163	LOC107089015	ENSCVAP00000006163	ENSCVAP00000018662	Bmi1 polycomb ring finger oncogene 1a.	Uncharacterized protein.	0.665
ENSCVAP00000006163	LOC107089316	ENSCVAP00000006163	ENSCVAP00000023843	Bmi1 polycomb ring finger oncogene 1a.	Chromobox homolog 2 (Drosophila Pc class).	0.741
ENSCVAP00000006163	LOC107092814	ENSCVAP00000006163	ENSCVAP00000001830	Bmi1 polycomb ring finger oncogene 1a.	Chromobox homolog 8a (Pc class homolog, Drosophila).	0.861
ENSCVAP00000006163	LOC107092841	ENSCVAP00000006163	ENSCVAP00000021067	Bmi1 polycomb ring finger oncogene 1a.	Chromobox homolog 4 (Pc class homolog, Drosophila).	0.834
ENSCVAP00000006163	LOC107098178	ENSCVAP00000006163	ENSCVAP00000014056	Bmi1 polycomb ring finger oncogene 1a.	Runt-related transcription factor.	0.646