42 items (Cyprinodon variegatus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	rnf2	Ring finger protein 2. (342 aa)
	LOC107089015	Uncharacterized protein. (901 aa)
	LOC107098659	Euchromatic histone-lysine N-methyltransferase 1a. (770 aa)
	EZH1	Enhancer of zeste 1 polycomb repressive complex 2 subunit. (768 aa)
	yaf2	YY1 associated factor 2. (191 aa)
	YAF2	YY1 associated factor 2. (181 aa)
	LOC107087701	VEFS-Box domain-containing protein. (665 aa)
	MAX	MYC associated factor X. (150 aa)
	tbx1	T-box transcription factor 1. (497 aa)
	ENSCVAP00000024550	Uncharacterized protein. (92 aa)
	LOC107084325	Chromobox homolog 3a (HP1 gamma homolog, Drosophila). (177 aa)
	ehmt1	Euchromatic histone-lysine N-methyltransferase 1b. (1279 aa)
	TBX22	T-box transcription factor 22. (482 aa)
	LOC107097264	T-box transcription factor 18. (516 aa)
	rbbp4	Retinoblastoma binding protein 4. (424 aa)
	ENSCVAP00000028169	FCS-type domain-containing protein. (660 aa)
	uxt	Ubiquitously-expressed, prefoldin-like chaperone. (146 aa)
	LOC107104038	Mbt domain containing 1. (693 aa)
	ENSCVAP00000030025	Si:ch211-195d17.2. (365 aa)
	pcgf6	Polycomb group ring finger 6. (248 aa)
	LOC107090369	Enhancer of polycomb homolog. (831 aa)
	LOC107097686	BHLH domain-containing protein. (2070 aa)
	eed	Embryonic ectoderm development. (443 aa)
	ENSCVAP00000002150	THAP-type domain-containing protein. (95 aa)
	ehmt2	Euchromatic histone-lysine N-methyltransferase 2. (1130 aa)
	chek1	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (464 aa)
	ENSCVAP00000001293	THAP-type domain-containing protein. (87 aa)
	LOC107093481	SUZ12 polycomb repressive complex 2 subunit b. (680 aa)
	ezh2	Enhancer of zeste 2 polycomb repressive complex 2 subunit. (761 aa)
	ENSCVAP00000006163	Bmi1 polycomb ring finger oncogene 1a. (332 aa)
	pcgf2	Polycomb group ring finger 2. (331 aa)
	tbx15	T-box transcription factor 15. (589 aa)
	RING1	Ring finger protein 1. (389 aa)
	ENSCVAP00000008602	Uncharacterized protein. (692 aa)
	pcgf1	Polycomb group ring finger 1. (260 aa)
	LOC107081848	Enhancer of polycomb homolog. (848 aa)
	tfdp1	Transcription factor. (410 aa)
	ENSCVAP00000013077	SET domain-containing protein. (176 aa)
	tbx10	Uncharacterized protein. (302 aa)
	max	Myc associated factor X. (180 aa)
	LOC107087514	T-box transcription factor 20. (416 aa)
	rybp	RING1 and YY1 binding protein b. (268 aa)

Your Current Organism:

Cyprinodon variegatus

NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCVAP00000001293	ENSCVAP00000006163	ENSCVAP00000001293	ENSCVAP00000006163	THAP-type domain-containing protein.	Bmi1 polycomb ring finger oncogene 1a.	0.474
ENSCVAP00000001293	ENSCVAP00000008602	ENSCVAP00000001293	ENSCVAP00000008602	THAP-type domain-containing protein.	Uncharacterized protein.	0.672
ENSCVAP00000001293	ENSCVAP00000013077	ENSCVAP00000001293	ENSCVAP00000013077	THAP-type domain-containing protein.	SET domain-containing protein.	0.456
ENSCVAP00000001293	ENSCVAP00000030025	ENSCVAP00000001293	ENSCVAP00000030025	THAP-type domain-containing protein.	Si:ch211-195d17.2.	0.903
ENSCVAP00000001293	EZH1	ENSCVAP00000001293	ENSCVAP00000019320	THAP-type domain-containing protein.	Enhancer of zeste 1 polycomb repressive complex 2 subunit.	0.546
ENSCVAP00000001293	LOC107084325	ENSCVAP00000001293	ENSCVAP00000025187	THAP-type domain-containing protein.	Chromobox homolog 3a (HP1 gamma homolog, Drosophila).	0.753
ENSCVAP00000001293	LOC107087701	ENSCVAP00000001293	ENSCVAP00000023368	THAP-type domain-containing protein.	VEFS-Box domain-containing protein.	0.476
ENSCVAP00000001293	LOC107093481	ENSCVAP00000001293	ENSCVAP00000000036	THAP-type domain-containing protein.	SUZ12 polycomb repressive complex 2 subunit b.	0.476
ENSCVAP00000001293	LOC107097686	ENSCVAP00000001293	ENSCVAP00000027372	THAP-type domain-containing protein.	BHLH domain-containing protein.	0.672
ENSCVAP00000001293	LOC107098659	ENSCVAP00000001293	ENSCVAP00000018720	THAP-type domain-containing protein.	Euchromatic histone-lysine N-methyltransferase 1a.	0.456
ENSCVAP00000001293	MAX	ENSCVAP00000001293	ENSCVAP00000024302	THAP-type domain-containing protein.	MYC associated factor X.	0.662
ENSCVAP00000001293	RING1	ENSCVAP00000001293	ENSCVAP00000008579	THAP-type domain-containing protein.	Ring finger protein 1.	0.830
ENSCVAP00000001293	YAF2	ENSCVAP00000001293	ENSCVAP00000021027	THAP-type domain-containing protein.	YY1 associated factor 2.	0.863
ENSCVAP00000001293	eed	ENSCVAP00000001293	ENSCVAP00000027768	THAP-type domain-containing protein.	Embryonic ectoderm development.	0.589
ENSCVAP00000001293	ehmt1	ENSCVAP00000001293	ENSCVAP00000025350	THAP-type domain-containing protein.	Euchromatic histone-lysine N-methyltransferase 1b.	0.456
ENSCVAP00000001293	ehmt2	ENSCVAP00000001293	ENSCVAP00000002089	THAP-type domain-containing protein.	Euchromatic histone-lysine N-methyltransferase 2.	0.456
ENSCVAP00000001293	ezh2	ENSCVAP00000001293	ENSCVAP00000005808	THAP-type domain-containing protein.	Enhancer of zeste 2 polycomb repressive complex 2 subunit.	0.546
ENSCVAP00000001293	max	ENSCVAP00000001293	ENSCVAP00000014509	THAP-type domain-containing protein.	Myc associated factor X.	0.662
ENSCVAP00000001293	pcgf1	ENSCVAP00000001293	ENSCVAP00000010881	THAP-type domain-containing protein.	Polycomb group ring finger 1.	0.804
ENSCVAP00000001293	pcgf2	ENSCVAP00000001293	ENSCVAP00000006372	THAP-type domain-containing protein.	Polycomb group ring finger 2.	0.474