45 items (Cyprinodon variegatus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC107093068	Si:ch211-284f22.3. (263 aa)
	LOC107097085	Uncharacterized protein. (725 aa)
	ENSCVAP00000012080	Vesicle (multivesicular body) trafficking 1. (322 aa)
	LOC107102334	VPS37C subunit of ESCRT-I. (356 aa)
	ubap1	Ubiquitin associated protein 1. (456 aa)
	LOC107095935	Uncharacterized protein. (245 aa)
	ubap1l	Uncharacterized protein. (342 aa)
	vps37b	Zgc:114173. (286 aa)
	hgs	Hepatocyte growth factor-regulated tyrosine kinase substrate. (772 aa)
	tsg101	Tumor susceptibility 101a. (390 aa)
	ZFYVE1	Uncharacterized protein. (621 aa)
	LOC107086476	Charged multivesicular body protein 4C. (231 aa)
	LOC107094496	Si:ch211-11n16.2. (655 aa)
	chmp3	Charged multivesicular body protein 3. (221 aa)
	rps27a	Ribosomal protein S27a. (181 aa)
	LOC107091143	Zgc:153240. (390 aa)
	tm9sf1	Transmembrane 9 superfamily member; Belongs to the nonaspanin (TM9SF) (TC 9.A.2) family. (594 aa)
	vps25	Vacuolar protein sorting 25 homolog. (189 aa)
	kxd1	KxDL motif containing 1. (184 aa)
	LOC107096871	Ubiquitin associated protein 1-like a. (321 aa)
	ENSCVAP00000021667	Ubiquitin-like domain-containing protein. (83 aa)
	LOC107086700	Charged multivesicular body protein 4Bb. (308 aa)
	LOC107093444	Uncharacterized protein. (222 aa)
	VPS4B	Vacuolar protein sorting 4 homolog B; Belongs to the AAA ATPase family. (508 aa)
	mvb12a	Uncharacterized protein. (284 aa)
	zfyve1	Zinc finger, FYVE domain containing 1. (774 aa)
	vps37a	VPS37A subunit of ESCRT-I. (375 aa)
	LOC107102142	Charged multivesicular body protein 6a. (207 aa)
	stam2	Signal transducing adaptor molecule (SH3 domain and ITAM motif) 2. (484 aa)
	vps36	Vacuolar protein sorting 36 homolog. (382 aa)
	LOC107099453	Uncharacterized protein; Belongs to the AAA ATPase family. (435 aa)
	chmp7	Charged multivesicular body protein 7. (443 aa)
	chmp6	Charged multivesicular body protein 6. (191 aa)
	zfyve19	Zinc finger, FYVE domain containing 19. (425 aa)
	vps28	Vacuolar protein sorting-associated protein 28 homolog; Component of the ESCRT-I complex (endosomal sorting complex required for transport I), a regulator of vesicular trafficking process. (223 aa)
	chmp2a	Charged multivesicular body protein 2A. (220 aa)
	uba52	Ubiquitin A-52 residue ribosomal protein fusion product 1. (128 aa)
	chmp5	Charged multivesicular body protein 5b. (288 aa)
	ENSCVAP00000024543	Zgc:123278. (186 aa)
	chmp2b	Charged multivesicular body protein 2Bb. (214 aa)
	mvb12b	Multivesicular body subunit 12Ba. (293 aa)
	LOC107102505	Vacuolar protein sorting 4 homolog A; Belongs to the AAA ATPase family. (436 aa)
	ENSCVAP00000007731	Uncharacterized protein. (74 aa)
	snf8	Vacuolar-sorting protein SNF8; Component of the endosomal sorting complex required for transport II (ESCRT-II), which is required for multivesicular body (MVB) formation and sorting of endosomal cargo proteins into MVBs. Belongs to the SNF8 family. (258 aa)
	stam	Signal transducing adaptor molecule (SH3 domain and ITAM motif) 1. (521 aa)

Your Current Organism:

Cyprinodon variegatus

NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCVAP00000007731	ENSCVAP00000012080	ENSCVAP00000007731	ENSCVAP00000012080	Uncharacterized protein.	Vesicle (multivesicular body) trafficking 1.	0.977
ENSCVAP00000007731	ENSCVAP00000021667	ENSCVAP00000007731	ENSCVAP00000021667	Uncharacterized protein.	Ubiquitin-like domain-containing protein.	0.463
ENSCVAP00000007731	ENSCVAP00000024543	ENSCVAP00000007731	ENSCVAP00000024543	Uncharacterized protein.	Zgc:123278.	0.466
ENSCVAP00000007731	LOC107086476	ENSCVAP00000007731	ENSCVAP00000005550	Uncharacterized protein.	Charged multivesicular body protein 4C.	0.834
ENSCVAP00000007731	LOC107086700	ENSCVAP00000007731	ENSCVAP00000020467	Uncharacterized protein.	Charged multivesicular body protein 4Bb.	0.834
ENSCVAP00000007731	LOC107091143	ENSCVAP00000007731	ENSCVAP00000001884	Uncharacterized protein.	Zgc:153240.	0.686
ENSCVAP00000007731	LOC107093444	ENSCVAP00000007731	ENSCVAP00000019915	Uncharacterized protein.	Uncharacterized protein.	0.834
ENSCVAP00000007731	LOC107099453	ENSCVAP00000007731	ENSCVAP00000028355	Uncharacterized protein.	Uncharacterized protein; Belongs to the AAA ATPase family.	0.975
ENSCVAP00000007731	LOC107102142	ENSCVAP00000007731	ENSCVAP00000031629	Uncharacterized protein.	Charged multivesicular body protein 6a.	0.724
ENSCVAP00000007731	LOC107102505	ENSCVAP00000007731	ENSCVAP00000007845	Uncharacterized protein.	Vacuolar protein sorting 4 homolog A; Belongs to the AAA ATPase family.	0.975
ENSCVAP00000007731	VPS4B	ENSCVAP00000007731	ENSCVAP00000019479	Uncharacterized protein.	Vacuolar protein sorting 4 homolog B; Belongs to the AAA ATPase family.	0.975
ENSCVAP00000007731	chmp2a	ENSCVAP00000007731	ENSCVAP00000026505	Uncharacterized protein.	Charged multivesicular body protein 2A.	0.951
ENSCVAP00000007731	chmp2b	ENSCVAP00000007731	ENSCVAP00000008355	Uncharacterized protein.	Charged multivesicular body protein 2Bb.	0.700
ENSCVAP00000007731	chmp3	ENSCVAP00000007731	ENSCVAP00000004259	Uncharacterized protein.	Charged multivesicular body protein 3.	0.904
ENSCVAP00000007731	chmp5	ENSCVAP00000007731	ENSCVAP00000024987	Uncharacterized protein.	Charged multivesicular body protein 5b.	0.900
ENSCVAP00000007731	chmp6	ENSCVAP00000007731	ENSCVAP00000027265	Uncharacterized protein.	Charged multivesicular body protein 6.	0.724
ENSCVAP00000007731	chmp7	ENSCVAP00000007731	ENSCVAP00000027973	Uncharacterized protein.	Charged multivesicular body protein 7.	0.758
ENSCVAP00000007731	rps27a	ENSCVAP00000007731	ENSCVAP00000003612	Uncharacterized protein.	Ribosomal protein S27a.	0.565
ENSCVAP00000007731	tm9sf1	ENSCVAP00000007731	ENSCVAP00000001330	Uncharacterized protein.	Transmembrane 9 superfamily member; Belongs to the nonaspanin (TM9SF) (TC 9.A.2) family.	0.817
ENSCVAP00000007731	tsg101	ENSCVAP00000007731	ENSCVAP00000007094	Uncharacterized protein.	Tumor susceptibility 101a.	0.466