10 items (Cyprinodon variegatus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	zfc3h1	Uncharacterized protein. (2061 aa)
	pdcd11	Programmed cell death 11. (1627 aa)
	prpf39	PRP39 pre-mRNA processing factor 39 homolog (yeast). (763 aa)
	xab2	XPA binding protein 2. (849 aa)
	LOC107090976	Si:ch211-114c17.1. (739 aa)
	utp6	UTP6 small subunit processome component. (595 aa)
	cstf3	Cleavage stimulation factor, 3' pre-RNA, subunit 3. (716 aa)
	crnkl1	Crooked neck pre-mRNA splicing factor 1. (743 aa)
	prpf6	PRP6 pre-mRNA processing factor 6 homolog (S. cerevisiae). (969 aa)
	sart3	Spliceosome associated factor 3, U4/U6 recycling protein. (943 aa)

Your Current Organism:

Cyprinodon variegatus

NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC107090976	zfc3h1	ENSCVAP00000010130	ENSCVAP00000016649	Si:ch211-114c17.1.	Uncharacterized protein.	0.420
crnkl1	prpf6	ENSCVAP00000028240	ENSCVAP00000025594	Crooked neck pre-mRNA splicing factor 1.	PRP6 pre-mRNA processing factor 6 homolog (S. cerevisiae).	0.499
crnkl1	sart3	ENSCVAP00000028240	ENSCVAP00000019501	Crooked neck pre-mRNA splicing factor 1.	Spliceosome associated factor 3, U4/U6 recycling protein.	0.401
crnkl1	xab2	ENSCVAP00000028240	ENSCVAP00000010458	Crooked neck pre-mRNA splicing factor 1.	XPA binding protein 2.	0.999
cstf3	pdcd11	ENSCVAP00000030856	ENSCVAP00000015932	Cleavage stimulation factor, 3' pre-RNA, subunit 3.	Programmed cell death 11.	0.428
pdcd11	cstf3	ENSCVAP00000015932	ENSCVAP00000030856	Programmed cell death 11.	Cleavage stimulation factor, 3' pre-RNA, subunit 3.	0.428
pdcd11	sart3	ENSCVAP00000015932	ENSCVAP00000019501	Programmed cell death 11.	Spliceosome associated factor 3, U4/U6 recycling protein.	0.485
pdcd11	utp6	ENSCVAP00000015932	ENSCVAP00000031220	Programmed cell death 11.	UTP6 small subunit processome component.	0.996
prpf6	crnkl1	ENSCVAP00000025594	ENSCVAP00000028240	PRP6 pre-mRNA processing factor 6 homolog (S. cerevisiae).	Crooked neck pre-mRNA splicing factor 1.	0.499
prpf6	sart3	ENSCVAP00000025594	ENSCVAP00000019501	PRP6 pre-mRNA processing factor 6 homolog (S. cerevisiae).	Spliceosome associated factor 3, U4/U6 recycling protein.	0.669
prpf6	xab2	ENSCVAP00000025594	ENSCVAP00000010458	PRP6 pre-mRNA processing factor 6 homolog (S. cerevisiae).	XPA binding protein 2.	0.744
sart3	crnkl1	ENSCVAP00000019501	ENSCVAP00000028240	Spliceosome associated factor 3, U4/U6 recycling protein.	Crooked neck pre-mRNA splicing factor 1.	0.401
sart3	pdcd11	ENSCVAP00000019501	ENSCVAP00000015932	Spliceosome associated factor 3, U4/U6 recycling protein.	Programmed cell death 11.	0.485
sart3	prpf6	ENSCVAP00000019501	ENSCVAP00000025594	Spliceosome associated factor 3, U4/U6 recycling protein.	PRP6 pre-mRNA processing factor 6 homolog (S. cerevisiae).	0.669
utp6	pdcd11	ENSCVAP00000031220	ENSCVAP00000015932	UTP6 small subunit processome component.	Programmed cell death 11.	0.996
xab2	crnkl1	ENSCVAP00000010458	ENSCVAP00000028240	XPA binding protein 2.	Crooked neck pre-mRNA splicing factor 1.	0.999
xab2	prpf6	ENSCVAP00000010458	ENSCVAP00000025594	XPA binding protein 2.	PRP6 pre-mRNA processing factor 6 homolog (S. cerevisiae).	0.744
zfc3h1	LOC107090976	ENSCVAP00000016649	ENSCVAP00000010130	Uncharacterized protein.	Si:ch211-114c17.1.	0.420