STRINGSTRING
atg12 atg12 atg10 atg10 atg4d atg4d wipi2 wipi2 gabarap gabarap rptor rptor atg4c atg4c LOC107085894 LOC107085894 igbp1 igbp1 LOC107094242 LOC107094242 atg16l1 atg16l1 LOC107084657 LOC107084657 LOC107100460 LOC107100460 atg5 atg5 WIPI1 WIPI1 atg101 atg101 becn1 becn1 mlst8 mlst8 atg3 atg3 ATG2B ATG2B LOC107082238 LOC107082238 mtor mtor atg9a atg9a gabarapl2 gabarapl2 atg2a atg2a LOC107087654 LOC107087654 pik3c3 pik3c3
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
atg12Ubiquitin-like protein ATG12; Ubiquitin-like protein involved in autophagic vesicle formation; Belongs to the ATG12 family. (117 aa)
atg10Autophagy_act_C domain-containing protein. (227 aa)
atg4dCysteine protease; Cysteine protease required for the cytoplasm to vacuole transport (Cvt) and autophagy; Belongs to the peptidase C54 family. (497 aa)
wipi2WD repeat domain, phosphoinositide interacting 2. (427 aa)
gabarapGABA(A) receptor-associated protein b. (122 aa)
rptorRegulatory associated protein of MTOR, complex 1. (1373 aa)
atg4cCysteine protease; Cysteine protease required for the cytoplasm to vacuole transport (Cvt) and autophagy; Belongs to the peptidase C54 family. (475 aa)
LOC107085894Serine/threonine-protein phosphatase. (309 aa)
igbp1Immunoglobulin (CD79A) binding protein 1. (354 aa)
LOC107094242GABA type A receptor associated protein like 2. (117 aa)
atg16l1ATG16 autophagy related 16-like 1 (S. cerevisiae). (604 aa)
LOC107084657Serine/threonine-protein phosphatase. (309 aa)
LOC107100460Autophagy-related protein 9; Involved in autophagy and cytoplasm to vacuole transport (Cvt) vesicle formation. Plays a key role in the organization of the preautophagosomal structure/phagophore assembly site (PAS), the nucleating site for formation of the sequestering vesicle. Belongs to the ATG9 family. (807 aa)
atg5Autophagy protein 5; Involved in autophagic vesicle formation. (275 aa)
WIPI1WD repeat domain, phosphoinositide interacting 1. (445 aa)
atg101Autophagy related 101. (215 aa)
becn1Beclin 1, autophagy related. (448 aa)
mlst8MTOR associated protein, LST8 homolog (S. cerevisiae). (260 aa)
atg3Autophagy-related protein 3. (316 aa)
ATG2BAutophagy related 2B. (1624 aa)
LOC107082238Zgc:92606. (117 aa)
mtorSerine/threonine-protein kinase TOR; Belongs to the PI3/PI4-kinase family. (2406 aa)
atg9aAutophagy-related protein 9; Involved in autophagy and cytoplasm to vacuole transport (Cvt) vesicle formation. Plays a key role in the organization of the preautophagosomal structure/phagophore assembly site (PAS), the nucleating site for formation of the sequestering vesicle. Belongs to the ATG9 family. (851 aa)
gabarapl2GABA(A) receptor-associated protein like 2. (116 aa)
atg2aAutophagy related 2A. (1988 aa)
LOC107087654Cysteine protease; Cysteine protease required for the cytoplasm to vacuole transport (Cvt) and autophagy; Belongs to the peptidase C54 family. (463 aa)
pik3c3Phosphatidylinositol 3-kinase catalytic subunit type 3. (885 aa)
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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