90 items (Cyprinodon variegatus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC107082256	Uncharacterized protein. (191 aa)
	ptpn6	Protein tyrosine phosphatase non-receptor type 6. (583 aa)
	nectin1	Nectin cell adhesion molecule 1b. (499 aa)
	lef1	Lymphoid enhancer-binding factor 1. (378 aa)
	igf1r	Tyrosine-protein kinase receptor. (1416 aa)
	ssx2ip	Synovial sarcoma, X breakpoint 2 interacting protein b. (562 aa)
	YES1	Tyrosine-protein kinase. (589 aa)
	LOC107096191	Tyrosine-protein kinase. (537 aa)
	crebbp	CREB binding protein b. (2380 aa)
	LOC107082777	Casein kinase 2, alpha prime polypeptide a; Belongs to the protein kinase superfamily. (356 aa)
	actb	Uncharacterized protein. (375 aa)
	LOC107097985	Zgc:109889. (552 aa)
	LOC107086129	Uncharacterized protein. (191 aa)
	LOC107099133	Uncharacterized protein. (193 aa)
	erbb2	Receptor protein-tyrosine kinase. (1289 aa)
	LOC107094012	WH1 domain-containing protein. (339 aa)
	LOC107084459	Mothers against decapentaplegic homolog. (516 aa)
	wasf2	WASP family member 2. (478 aa)
	LOC107088342	WASP like actin nucleation promoting factor b. (516 aa)
	wasf1	WASP family member 1. (556 aa)
	LOC107098322	Receptor protein serine/threonine kinase; Belongs to the protein kinase superfamily. TKL Ser/Thr protein kinase family. TGFB receptor subfamily. (510 aa)
	wasf3	WASP family member 3b. (490 aa)
	LOC107088781	Zgc:158689. (566 aa)
	LOC107093910	Snail family zinc finger 1a. (258 aa)
	met	MET proto-oncogene, receptor tyrosine kinase. (1414 aa)
	CSNK2A2	Casein kinase 2 alpha 2; Belongs to the protein kinase superfamily. (350 aa)
	LOC107096675	WH2 domain-containing protein. (465 aa)
	Wasl	WH1 domain-containing protein. (103 aa)
	LOC107087594	Snail family zinc finger 1b. (269 aa)
	rac2	Uncharacterized protein. (192 aa)
	LOC107100676	Serine/threonine-protein kinase receptor; Belongs to the protein kinase superfamily. TKL Ser/Thr protein kinase family. TGFB receptor subfamily. (505 aa)
	LOC107101293	Uncharacterized protein. (768 aa)
	NECTIN3	Nectin cell adhesion molecule 3. (558 aa)
	PTPRB	Protein tyrosine phosphatase receptor type B. (2544 aa)
	tcf7	Transcription factor 7. (388 aa)
	LOC107097119	Mitogen-activated protein kinase; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family. MAP kinase subfamily. (469 aa)
	LOC107101186	Mitogen-activated protein kinase. (379 aa)
	ENSCVAP00000014598	Tyrosine-protein phosphatase domain-containing protein. (280 aa)
	mapk1	Mitogen-activated protein kinase. (351 aa)
	LOC107084591	Vinculin a. (1066 aa)
	LOC107092536	Rac family small GTPase 1b. (192 aa)
	ACTN4	Actinin alpha 4. (898 aa)
	LOC107102146	BAI1-associated protein 2a. (546 aa)
	CTNND1	Catenin delta 1. (917 aa)
	lmo7	LIM domain 7a. (1432 aa)
	was	Uncharacterized protein. (536 aa)
	LOC107088450	Mothers against decapentaplegic homolog. (503 aa)
	LOC107087864	Nectin cell adhesion molecule 3b. (549 aa)
	LOC107083428	CREB binding protein a. (2444 aa)
	TGFBR2	Serine/threonine-protein kinase receptor; Belongs to the protein kinase superfamily. TKL Ser/Thr protein kinase family. TGFB receptor subfamily. (542 aa)
	fyn	Tyrosine-protein kinase. (537 aa)
	ctnnd1	Catenin (cadherin-associated protein), delta 1. (929 aa)
	LOC107092878	E1A binding protein p300 a. (2648 aa)
	LOC107098505	Uncharacterized protein. (501 aa)
	LOC107086178	Casein kinase II subunit beta; Plays a complex role in regulating the basal catalytic activity of the alpha subunit; Belongs to the casein kinase 2 subunit beta family. (215 aa)
	CDC42	Cell division cycle 42. (191 aa)
	LOC107100888	Uncharacterized protein. (590 aa)
	tcf7l2	Transcription factor 7 like 2. (630 aa)
	smad3	Mothers against decapentaplegic homolog. (425 aa)
	LOC107102542	Zgc:86598; Belongs to the protein kinase superfamily. (412 aa)
	LOC107087645	Rac family small GTPase 3b. (192 aa)
	LOC107103110	Uncharacterized protein. (193 aa)
	SMAD3	Mothers against decapentaplegic homolog. (425 aa)
	LOC107087055	Uncharacterized protein. (193 aa)
	BAIAP2	BAI1 associated protein 2. (502 aa)
	ep300	E1A binding protein p300 b. (2766 aa)
	LOC107089230	Uncharacterized protein; Cadherins are calcium-dependent cell adhesion proteins. (794 aa)
	LOC107085934	Protein tyrosine phosphatase receptor type Fb. (1919 aa)
	LOC107098892	Receptor protein-tyrosine kinase. (1168 aa)
	ctnna1	Catenin (cadherin-associated protein), alpha 1. (907 aa)
	LOC107099959	Tyrosine-protein kinase. (547 aa)
	ctnna2	Catenin (cadherin-associated protein), alpha 2. (905 aa)
	LOC107081801	Fibroblast growth factor receptor. (831 aa)
	LOC107090562	Uncharacterized protein. (932 aa)
	actn1	Actinin, alpha 1. (890 aa)
	tjp1	Tight junction protein 1a; Belongs to the MAGUK family. (1760 aa)
	farp2	FERM, RhoGEF and pleckstrin domain protein 2. (1056 aa)
	insr	Tyrosine-protein kinase receptor. (1362 aa)
	LOC107097523	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (484 aa)
	LOC107085118	Uncharacterized protein. (191 aa)
	LOC107082304	Transcription factor 7 like 1b. (579 aa)
	LOC107100393	Uncharacterized protein. (193 aa)
	LOC107090730	Tyrosine-protein phosphatase non-receptor type. (434 aa)
	ctnnb1	Catenin (cadherin-associated protein), beta 1. (783 aa)
	egfr	Receptor protein-tyrosine kinase. (1205 aa)
	LOC107081730	Synovial sarcoma, X breakpoint 2 interacting protein a. (587 aa)
	vcl	Vinculin b. (1066 aa)
	nectin2	Si:ch73-22o12.1. (527 aa)
	fer	Tyrosine-protein kinase; Belongs to the protein kinase superfamily. Tyr protein kinase family. Fes/fps subfamily. (825 aa)
	ENSCVAP00000032808	PVR cell adhesion molecule related 2 like. (269 aa)

Your Current Organism:

Cyprinodon variegatus

NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ACTN4	LOC107081730	ENSCVAP00000016966	ENSCVAP00000031832	Actinin alpha 4.	Synovial sarcoma, X breakpoint 2 interacting protein a.	0.902
ACTN4	LOC107084591	ENSCVAP00000016966	ENSCVAP00000015994	Actinin alpha 4.	Vinculin a.	0.959
ACTN4	LOC107090562	ENSCVAP00000016966	ENSCVAP00000028176	Actinin alpha 4.	Uncharacterized protein.	0.907
ACTN4	actb	ENSCVAP00000016966	ENSCVAP00000002597	Actinin alpha 4.	Uncharacterized protein.	0.952
ACTN4	actn1	ENSCVAP00000016966	ENSCVAP00000029159	Actinin alpha 4.	Actinin, alpha 1.	0.900
ACTN4	ctnna1	ENSCVAP00000016966	ENSCVAP00000027273	Actinin alpha 4.	Catenin (cadherin-associated protein), alpha 1.	0.928
ACTN4	ctnna2	ENSCVAP00000016966	ENSCVAP00000027956	Actinin alpha 4.	Catenin (cadherin-associated protein), alpha 2.	0.928
ACTN4	lmo7	ENSCVAP00000016966	ENSCVAP00000018380	Actinin alpha 4.	LIM domain 7a.	0.907
ACTN4	ssx2ip	ENSCVAP00000016966	ENSCVAP00000002042	Actinin alpha 4.	Synovial sarcoma, X breakpoint 2 interacting protein b.	0.902
ACTN4	vcl	ENSCVAP00000016966	ENSCVAP00000032288	Actinin alpha 4.	Vinculin b.	0.959
BAIAP2	CDC42	ENSCVAP00000025136	ENSCVAP00000021883	BAI1 associated protein 2.	Cell division cycle 42.	0.840
BAIAP2	LOC107082256	ENSCVAP00000025136	ENSCVAP00000000232	BAI1 associated protein 2.	Uncharacterized protein.	0.768
BAIAP2	LOC107085118	ENSCVAP00000025136	ENSCVAP00000031124	BAI1 associated protein 2.	Uncharacterized protein.	0.840
BAIAP2	LOC107086129	ENSCVAP00000025136	ENSCVAP00000003772	BAI1 associated protein 2.	Uncharacterized protein.	0.768
BAIAP2	LOC107087645	ENSCVAP00000025136	ENSCVAP00000024612	BAI1 associated protein 2.	Rac family small GTPase 3b.	0.965
BAIAP2	LOC107088342	ENSCVAP00000025136	ENSCVAP00000005556	BAI1 associated protein 2.	WASP like actin nucleation promoting factor b.	0.611
BAIAP2	LOC107088781	ENSCVAP00000025136	ENSCVAP00000006658	BAI1 associated protein 2.	Zgc:158689.	0.930
BAIAP2	LOC107092536	ENSCVAP00000025136	ENSCVAP00000016191	BAI1 associated protein 2.	Rac family small GTPase 1b.	0.985
BAIAP2	LOC107094012	ENSCVAP00000025136	ENSCVAP00000004226	BAI1 associated protein 2.	WH1 domain-containing protein.	0.406
BAIAP2	LOC107096675	ENSCVAP00000025136	ENSCVAP00000007899	BAI1 associated protein 2.	WH2 domain-containing protein.	0.918