(9 nodes) Aldehyde oxidase/xanthine dehydrogenase, first molybdopterin binding domain network (Amycolatopsis rifamycinica)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	DV20_41195	Carbon monoxide dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (722 aa)
	DV20_14900	Carbon monoxide dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (752 aa)
	DV20_09675	Carbon monoxide dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (724 aa)
	DV20_01355	Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (706 aa)
	DV20_15150	Carbon monoxide dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (813 aa)
	DV20_37845	Isoquinoline 1-oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (745 aa)
	DV20_36420	Carbon monoxide dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (763 aa)
	DV20_35730	Carbon monoxide dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (739 aa)
	DV20_18255	Carbon monoxide dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (758 aa)

Your Current Organism:

Amycolatopsis rifamycinica

NCBI taxonomy Id: 287986
Other names: A. rifamycinica, ATCC 27643, Amycolatopsis rifamycinica Bala et al. 2004, DSM 46095, JCM 12674, strain NT 19

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Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
DV20_01355	DV20_09675	Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Carbon monoxide dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.705
DV20_09675	DV20_01355	Carbon monoxide dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.705
DV20_09675	DV20_35730	Carbon monoxide dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Carbon monoxide dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.700
DV20_09675	DV20_41195	Carbon monoxide dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Carbon monoxide dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.699
DV20_14900	DV20_36420	Carbon monoxide dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Carbon monoxide dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.729
DV20_35730	DV20_09675	Carbon monoxide dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Carbon monoxide dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.700
DV20_36420	DV20_14900	Carbon monoxide dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Carbon monoxide dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.729
DV20_41195	DV20_09675	Carbon monoxide dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Carbon monoxide dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.699