(5 nodes) Set1C/COMPASS complex network (Ectocarpus siliculosus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Esi_0021_0081	Uncharacterized protein. (1677 aa)
	Esi_0213_0041	Uncharacterized protein. (108 aa)
	Esi_0042_0126	Retinoblastoma binding protein 5. (597 aa)
	Esi_0455_0010	SET domain-containing protein. (209 aa)
	Esi_0004_0064	B30.2/SPRY domain-containing protein. (326 aa)

Your Current Organism:

Ectocarpus siliculosus

NCBI taxonomy Id: 2880
Other names: E. siliculosus

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Esi_0004_0064	Esi_0021_0081	D8LMA4	D7FR56	B30.2/SPRY domain-containing protein.	Uncharacterized protein.	0.899
Esi_0004_0064	Esi_0042_0126	D8LMA4	D7G0T3	B30.2/SPRY domain-containing protein.	Retinoblastoma binding protein 5.	0.999
Esi_0004_0064	Esi_0213_0041	D8LMA4	D7FRE3	B30.2/SPRY domain-containing protein.	Uncharacterized protein.	0.993
Esi_0004_0064	Esi_0455_0010	D8LMA4	D7G1Q0	B30.2/SPRY domain-containing protein.	SET domain-containing protein.	0.900
Esi_0021_0081	Esi_0004_0064	D7FR56	D8LMA4	Uncharacterized protein.	B30.2/SPRY domain-containing protein.	0.899
Esi_0021_0081	Esi_0042_0126	D7FR56	D7G0T3	Uncharacterized protein.	Retinoblastoma binding protein 5.	0.892
Esi_0021_0081	Esi_0213_0041	D7FR56	D7FRE3	Uncharacterized protein.	Uncharacterized protein.	0.874
Esi_0021_0081	Esi_0455_0010	D7FR56	D7G1Q0	Uncharacterized protein.	SET domain-containing protein.	0.581
Esi_0042_0126	Esi_0004_0064	D7G0T3	D8LMA4	Retinoblastoma binding protein 5.	B30.2/SPRY domain-containing protein.	0.999
Esi_0042_0126	Esi_0021_0081	D7G0T3	D7FR56	Retinoblastoma binding protein 5.	Uncharacterized protein.	0.892
Esi_0042_0126	Esi_0213_0041	D7G0T3	D7FRE3	Retinoblastoma binding protein 5.	Uncharacterized protein.	0.993
Esi_0042_0126	Esi_0455_0010	D7G0T3	D7G1Q0	Retinoblastoma binding protein 5.	SET domain-containing protein.	0.900
Esi_0213_0041	Esi_0004_0064	D7FRE3	D8LMA4	Uncharacterized protein.	B30.2/SPRY domain-containing protein.	0.993
Esi_0213_0041	Esi_0021_0081	D7FRE3	D7FR56	Uncharacterized protein.	Uncharacterized protein.	0.874
Esi_0213_0041	Esi_0042_0126	D7FRE3	D7G0T3	Uncharacterized protein.	Retinoblastoma binding protein 5.	0.993
Esi_0213_0041	Esi_0455_0010	D7FRE3	D7G1Q0	Uncharacterized protein.	SET domain-containing protein.	0.817
Esi_0455_0010	Esi_0004_0064	D7G1Q0	D8LMA4	SET domain-containing protein.	B30.2/SPRY domain-containing protein.	0.900
Esi_0455_0010	Esi_0021_0081	D7G1Q0	D7FR56	SET domain-containing protein.	Uncharacterized protein.	0.581
Esi_0455_0010	Esi_0042_0126	D7G1Q0	D7G0T3	SET domain-containing protein.	Retinoblastoma binding protein 5.	0.900
Esi_0455_0010	Esi_0213_0041	D7G1Q0	D7FRE3	SET domain-containing protein.	Uncharacterized protein.	0.817