(36 nodes) Mixed, incl. mRNA 3-end processing, and Protein-arginine omega-N symmetric methyltransferase activity network (Ectocarpus siliculosus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Esi_0115_0057	Uncharacterized protein. (255 aa)
	Esi_0122_0102	Uncharacterized protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. Protein arginine N-methyltransferase family. (803 aa)
	Esi_0133_0084	Uncharacterized protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. Protein arginine N-methyltransferase family. (250 aa)
	Esi_0156_0017	SUDD-like protein. (768 aa)
	Esi_0171_0004	HELP domain containing protein. (169 aa)
	Esi_0193_0062	Uncharacterized protein. (684 aa)
	Esi_0002_0248	Cleavage and polyadenylation specificity factor subunit 2. (997 aa)
	Esi_0002_0304	Uncharacterized protein. (496 aa)
	Esi_0021_0178	Uncharacterized protein. (2289 aa)
	Esi_0212_0043	Uncharacterized protein. (1254 aa)
	Esi_0226_0033	Uncharacterized protein. (362 aa)
	Esi_0260_0031	RNP-1 like RNA-binding protein. (262 aa)
	Esi_0003_0018	S1-like domain-containing protein. (253 aa)
	Esi_0312_0034	Uncharacterized protein. (533 aa)
	Esi_0371_0015	WD repeat domain-containing protein, putative. (4053 aa)
	Esi_0475_0004	Uncharacterized protein. (411 aa)
	Esi_0552_0010	Uncharacterized protein. (226 aa)
	Esi_0083_0064	Uncharacterized protein. (1677 aa)
	Esi_0092_0070	Cleavage and polyadenylation specificity factor CG10110-PA. (1906 aa)
	Esi_0092_0074	CPSF_A domain-containing protein. (255 aa)
	Esi_0000_0305	Uncharacterized protein. (1052 aa)
	Esi_0000_0423	WD_REPEATS_REGION domain-containing protein. (324 aa)
	Esi_0304_0024	Uncharacterized protein. (108 aa)
	Esi_0304_0027	Beta-Casp domain-containing protein. (752 aa)
	Esi_0031_0092	Uncharacterized protein. (775 aa)
	Esi_0038_0107	CID domain-containing protein. (679 aa)
	Esi_0004_0122	DWNN domain-containing protein. (79 aa)
	Esi_0004_0124	Uncharacterized protein. (389 aa)
	Esi_0004_0252	TPR_REGION domain-containing protein. (800 aa)
	Esi_0056_0059	Helicase ATP-binding domain-containing protein. (1076 aa)
	SKB1	Protein arginine N-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. (739 aa)
	Esi_0062_0095	Protein CLP1 homolog; Required for endonucleolytic cleavage during polyadenylation- dependent pre-mRNA 3'-end formation; Belongs to the Clp1 family. Clp1 subfamily. (460 aa)
	Esi_0072_0033	Uncharacterized protein. (230 aa)
	Esi_0081_0090	Uncharacterized protein. (410 aa)
	Esi_0081_0091	Similar to Ssu72-like protein. (94 aa)
	Esi_0099_0035	Fip1 domain-containing protein. (465 aa)

Your Current Organism:

Ectocarpus siliculosus

NCBI taxonomy Id: 2880
Other names: E. siliculosus

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Esi_0000_0305	Esi_0000_0423	D8LB82	D8LBF9	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.963
Esi_0000_0305	Esi_0002_0248	D8LB82	D7FQA4	Uncharacterized protein.	Cleavage and polyadenylation specificity factor subunit 2.	0.980
Esi_0000_0305	Esi_0002_0304	D8LB82	D7FQE0	Uncharacterized protein.	Uncharacterized protein.	0.961
Esi_0000_0305	Esi_0004_0122	D8LB82	D8LMD4	Uncharacterized protein.	DWNN domain-containing protein.	0.958
Esi_0000_0305	Esi_0004_0124	D8LB82	D8LMD5	Uncharacterized protein.	Uncharacterized protein.	0.958
Esi_0000_0305	Esi_0004_0252	D8LB82	D8LMJ6	Uncharacterized protein.	TPR_REGION domain-containing protein.	0.979
Esi_0000_0305	Esi_0021_0178	D8LB82	D7FR21	Uncharacterized protein.	Uncharacterized protein.	0.692
Esi_0000_0305	Esi_0031_0092	D8LB82	D8LKW8	Uncharacterized protein.	Uncharacterized protein.	0.963
Esi_0000_0305	Esi_0038_0107	D8LB82	D8LM04	Uncharacterized protein.	CID domain-containing protein.	0.937
Esi_0000_0305	Esi_0062_0095	D8LB82	D8LR58	Uncharacterized protein.	Protein CLP1 homolog; Required for endonucleolytic cleavage during polyadenylation- dependent pre-mRNA 3'-end formation; Belongs to the Clp1 family. Clp1 subfamily.	0.965
Esi_0000_0305	Esi_0072_0033	D8LB82	D8LSD4	Uncharacterized protein.	Uncharacterized protein.	0.911
Esi_0000_0305	Esi_0081_0090	D8LB82	D8LTB5	Uncharacterized protein.	Uncharacterized protein.	0.911
Esi_0000_0305	Esi_0081_0091	D8LB82	D8LTB6	Uncharacterized protein.	Similar to Ssu72-like protein.	0.911
Esi_0000_0305	Esi_0083_0064	D8LB82	D7G7I2	Uncharacterized protein.	Uncharacterized protein.	0.692
Esi_0000_0305	Esi_0092_0070	D8LB82	D7G8W8	Uncharacterized protein.	Cleavage and polyadenylation specificity factor CG10110-PA.	0.964
Esi_0000_0305	Esi_0092_0074	D8LB82	D7G8W9	Uncharacterized protein.	CPSF_A domain-containing protein.	0.964
Esi_0000_0305	Esi_0099_0035	D8LB82	D8LU95	Uncharacterized protein.	Fip1 domain-containing protein.	0.980
Esi_0000_0305	Esi_0115_0057	D8LB82	D7FHZ8	Uncharacterized protein.	Uncharacterized protein.	0.955
Esi_0000_0305	Esi_0171_0004	D8LB82	D7FMU4	Uncharacterized protein.	HELP domain containing protein.	0.692
Esi_0000_0305	Esi_0193_0062	D8LB82	D7FPL2	Uncharacterized protein.	Uncharacterized protein.	0.677