(6 nodes) Phagocytosis, and NET domain superfamily network (Ectocarpus siliculosus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Esi_0403_0011	Uncharacterized protein. (340 aa)
	Esi_0055_0014	JMJD6 protein. (452 aa)
	Esi_0055_0061	JmjC domain-containing protein. (411 aa)
	Esi_0079_0037	Bromo domain-containing protein. (2173 aa)
	Esi_0000_0505	Bromodomain-containing protein. (2710 aa)
	Esi_0131_0061	JmjC domain-containing protein. (561 aa)

Your Current Organism:

Ectocarpus siliculosus

NCBI taxonomy Id: 2880
Other names: E. siliculosus

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Esi_0000_0505	Esi_0055_0014	D8LBK0	D7G461	Bromodomain-containing protein.	JMJD6 protein.	0.426
Esi_0000_0505	Esi_0055_0061	D8LBK0	D7G489	Bromodomain-containing protein.	JmjC domain-containing protein.	0.426
Esi_0000_0505	Esi_0131_0061	D8LBK0	D8LEI9	Bromodomain-containing protein.	JmjC domain-containing protein.	0.426
Esi_0055_0014	Esi_0000_0505	D7G461	D8LBK0	JMJD6 protein.	Bromodomain-containing protein.	0.426
Esi_0055_0014	Esi_0079_0037	D7G461	D7G6R7	JMJD6 protein.	Bromo domain-containing protein.	0.426
Esi_0055_0014	Esi_0403_0011	D7G461	D7G0I3	JMJD6 protein.	Uncharacterized protein.	0.426
Esi_0055_0061	Esi_0000_0505	D7G489	D8LBK0	JmjC domain-containing protein.	Bromodomain-containing protein.	0.426
Esi_0055_0061	Esi_0079_0037	D7G489	D7G6R7	JmjC domain-containing protein.	Bromo domain-containing protein.	0.426
Esi_0055_0061	Esi_0403_0011	D7G489	D7G0I3	JmjC domain-containing protein.	Uncharacterized protein.	0.426
Esi_0079_0037	Esi_0055_0014	D7G6R7	D7G461	Bromo domain-containing protein.	JMJD6 protein.	0.426
Esi_0079_0037	Esi_0055_0061	D7G6R7	D7G489	Bromo domain-containing protein.	JmjC domain-containing protein.	0.426
Esi_0079_0037	Esi_0131_0061	D7G6R7	D8LEI9	Bromo domain-containing protein.	JmjC domain-containing protein.	0.426
Esi_0131_0061	Esi_0000_0505	D8LEI9	D8LBK0	JmjC domain-containing protein.	Bromodomain-containing protein.	0.426
Esi_0131_0061	Esi_0079_0037	D8LEI9	D7G6R7	JmjC domain-containing protein.	Bromo domain-containing protein.	0.426
Esi_0131_0061	Esi_0403_0011	D8LEI9	D7G0I3	JmjC domain-containing protein.	Uncharacterized protein.	0.426
Esi_0403_0011	Esi_0055_0014	D7G0I3	D7G461	Uncharacterized protein.	JMJD6 protein.	0.426
Esi_0403_0011	Esi_0055_0061	D7G0I3	D7G489	Uncharacterized protein.	JmjC domain-containing protein.	0.426
Esi_0403_0011	Esi_0131_0061	D7G0I3	D8LEI9	Uncharacterized protein.	JmjC domain-containing protein.	0.426