(8 nodes) Peptidyl-methionine modification network (Ectocarpus siliculosus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Esi_0350_0007	Uncharacterized protein. (114 aa)
	Esi_0005_0172	N-acetyltransferase domain-containing protein. (173 aa)
	Esi_0060_0045	Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins; Belongs to the polypeptide deformylase family. (97 aa)
	Esi_0060_0046	Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins; Belongs to the polypeptide deformylase family. (209 aa)
	Esi_0077_0009	Acetyltransferase 1-like. (981 aa)
	Esi_0107_0020	TPR_REGION domain-containing protein. (1105 aa)
	Esi_0228_0005	Uncharacterized protein. (1234 aa)
	Esi_0029_0054	Uncharacterized protein. (193 aa)

Your Current Organism:

Ectocarpus siliculosus

NCBI taxonomy Id: 2880
Other names: E. siliculosus

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Esi_0005_0172	Esi_0077_0009	D8LNS8	D8LSU9	N-acetyltransferase domain-containing protein.	Acetyltransferase 1-like.	0.483
Esi_0005_0172	Esi_0107_0020	D8LNS8	D7FHB8	N-acetyltransferase domain-containing protein.	TPR_REGION domain-containing protein.	0.981
Esi_0077_0009	Esi_0005_0172	D8LSU9	D8LNS8	Acetyltransferase 1-like.	N-acetyltransferase domain-containing protein.	0.483
Esi_0077_0009	Esi_0107_0020	D8LSU9	D7FHB8	Acetyltransferase 1-like.	TPR_REGION domain-containing protein.	0.667
Esi_0107_0020	Esi_0005_0172	D7FHB8	D8LNS8	TPR_REGION domain-containing protein.	N-acetyltransferase domain-containing protein.	0.981
Esi_0107_0020	Esi_0077_0009	D7FHB8	D8LSU9	TPR_REGION domain-containing protein.	Acetyltransferase 1-like.	0.667