49 items (Ectocarpus siliculosus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Esi_1053_0006	V-ATPase_H_C domain-containing protein. (92 aa)
	Esi_0007_0179	Uncharacterized protein. (106 aa)
	NCX	Putative sodium calcium exchanger; Belongs to the Ca(2+):cation antiporter (CaCA) (TC 2.A.19) family. (414 aa)
	Esi_0069_0025	YqgFc domain-containing protein. (296 aa)
	Esi_0062_0119	Uncharacterized protein. (1745 aa)
	Esi_0052_0018	Uncharacterized protein. (2911 aa)
	Esi_0005_0257	Uncharacterized protein. (301 aa)
	Esi_0192_0021	Uncharacterized protein. (2777 aa)
	Esi_0167_0071	FPL domain-containing protein. (1172 aa)
	Esi_0015_0112	N_BRCA1_IG domain-containing protein. (214 aa)
	Esi_0015_0036	Glucosylceramidase, family GH30. (762 aa)
	Esi_0014_0153	Uncharacterized protein. (714 aa)
	Esi_0012_0022	V-type proton ATPase proteolipid subunit; Proton-conducting pore forming subunit of the membrane integral V0 complex of vacuolar ATPase. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells. (168 aa)
	Esi_0111_0009	Vacuolar proton pump subunit B; Non-catalytic subunit of the peripheral V1 complex of vacuolar ATPase; Belongs to the ATPase alpha/beta chains family. (497 aa)
	Esi_0011_0001	Zinc_ribbon_16 domain-containing protein. (150 aa)
	Esi_0000_0456	Asparaginase, c-terminal. (247 aa)
	Esi_0000_0121	Uncharacterized protein. (396 aa)
	Esi_0091_0095	V-type proton ATPase proteolipid subunit; Proton-conducting pore forming subunit of the membrane integral V0 complex of vacuolar ATPase. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells. (164 aa)
	Esi_0008_0095	Uncharacterized protein. (268 aa)
	Esi_0764_0006	Uncharacterized protein. (707 aa)
	Esi_0073_0132	Possible vacuolar protein. (1269 aa)
	Esi_0058_0006	Uncharacterized protein. (1369 aa)
	Esi_0057_0068	RING-type domain-containing protein. (948 aa)
	Esi_0050_0082	Uncharacterized protein; Belongs to the RNase T2 family. (293 aa)
	Atg8	Autophagy-related protein. (115 aa)
	Esi_0048_0106	V-type proton ATPase subunit C; Subunit of the peripheral V1 complex of vacuolar ATPase. Subunit C is necessary for the assembly of the catalytic sector of the enzyme and is likely to have a specific function in its catalytic activity. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells. (438 aa)
	Esi_0033_0132	Uncharacterized protein. (361 aa)
	Esi_0323_0013	FPL domain-containing protein. (1011 aa)
	Esi_0302_0002	Uncharacterized protein. (1277 aa)
	Esi_0298_0002	Uncharacterized protein. (596 aa)
	Esi_0295_0030	Carbohydrate kinase, FGGY. (468 aa)
	Cys-2	Cathepsin L-like proteinase; Belongs to the peptidase C1 family. (475 aa)
	TyrA	Contains domains for prephenate dehydrogenase and nucleoside-diphosphate-sugar epimerases. (306 aa)
	Esi_0246_0006	Uncharacterized protein. (3781 aa)
	ARL8	ARL8, ARF-like Ras superfamily GTPase; Belongs to the small GTPase superfamily. Arf family. (178 aa)
	Esi_0243_0031	N_BRCA1_IG domain-containing protein. (584 aa)
	Esi_0226_0005	Uncharacterized protein. (477 aa)
	Esi_0211_0033	Uncharacterized protein. (694 aa)
	Esi_0002_0045	V-type proton ATPase subunit a; Essential component of the vacuolar proton pump (V-ATPase), a multimeric enzyme that catalyzes the translocation of protons across the membranes. Required for assembly and activity of the V-ATPase. (975 aa)
	Esi_0189_0031	Uncharacterized protein; Belongs to the battenin family. (113 aa)
	Esi_0189_0027	Uncharacterized protein. (379 aa)
	Esi_0018_0102	Uncharacterized protein. (403 aa)
	Esi_0166_0031	MFS domain-containing protein. (423 aa)
	Esi_0143_0068	V-type proton ATPase subunit F; Subunit of the peripheral V1 complex of vacuolar ATPase essential for assembly or catalytic function. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells. (117 aa)
	Esi_0136_0046	V-type proton ATPase subunit G; Catalytic subunit of the peripheral V1 complex of vacuolar ATPase (V-ATPase). V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells. (155 aa)
	Esi_0136_0041	annotation not available (413 aa)
	Esi_0134_0005	Uncharacterized protein. (307 aa)
	Esi_0122_0063	Uncharacterized protein; Belongs to the Ca(2+):cation antiporter (CaCA) (TC 2.A.19) family. (441 aa)
	Esi_1060_0003	Uncharacterized protein. (343 aa)

Your Current Organism:

Ectocarpus siliculosus

NCBI taxonomy Id: 2880
Other names: E. siliculosus

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ARL8	Esi_0000_0121	D7FT57	D8LAZ9	ARL8, ARF-like Ras superfamily GTPase; Belongs to the small GTPase superfamily. Arf family.	Uncharacterized protein.	0.524
ARL8	Esi_0002_0045	D7FT57	D7FPY6	ARL8, ARF-like Ras superfamily GTPase; Belongs to the small GTPase superfamily. Arf family.	V-type proton ATPase subunit a; Essential component of the vacuolar proton pump (V-ATPase), a multimeric enzyme that catalyzes the translocation of protons across the membranes. Required for assembly and activity of the V-ATPase.	0.496
ARL8	Esi_0012_0022	D7FT57	D8LDE7	ARL8, ARF-like Ras superfamily GTPase; Belongs to the small GTPase superfamily. Arf family.	V-type proton ATPase proteolipid subunit; Proton-conducting pore forming subunit of the membrane integral V0 complex of vacuolar ATPase. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.	0.400
ARL8	Esi_0015_0112	D7FT57	D8LFK8	ARL8, ARF-like Ras superfamily GTPase; Belongs to the small GTPase superfamily. Arf family.	N_BRCA1_IG domain-containing protein.	0.458
ARL8	Esi_0033_0132	D7FT57	D7FXN6	ARL8, ARF-like Ras superfamily GTPase; Belongs to the small GTPase superfamily. Arf family.	Uncharacterized protein.	0.472
ARL8	Esi_0048_0106	D7FT57	D7G2Q6	ARL8, ARF-like Ras superfamily GTPase; Belongs to the small GTPase superfamily. Arf family.	V-type proton ATPase subunit C; Subunit of the peripheral V1 complex of vacuolar ATPase. Subunit C is necessary for the assembly of the catalytic sector of the enzyme and is likely to have a specific function in its catalytic activity. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.	0.491
ARL8	Esi_0057_0068	D7FT57	D7G4J4	ARL8, ARF-like Ras superfamily GTPase; Belongs to the small GTPase superfamily. Arf family.	RING-type domain-containing protein.	0.597
ARL8	Esi_0091_0095	D7FT57	D7G8S5	ARL8, ARF-like Ras superfamily GTPase; Belongs to the small GTPase superfamily. Arf family.	V-type proton ATPase proteolipid subunit; Proton-conducting pore forming subunit of the membrane integral V0 complex of vacuolar ATPase. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.	0.400
ARL8	Esi_0111_0009	D7FT57	D8LCT6	ARL8, ARF-like Ras superfamily GTPase; Belongs to the small GTPase superfamily. Arf family.	Vacuolar proton pump subunit B; Non-catalytic subunit of the peripheral V1 complex of vacuolar ATPase; Belongs to the ATPase alpha/beta chains family.	0.503
ARL8	Esi_0136_0046	D7FT57	D7FJS2	ARL8, ARF-like Ras superfamily GTPase; Belongs to the small GTPase superfamily. Arf family.	V-type proton ATPase subunit G; Catalytic subunit of the peripheral V1 complex of vacuolar ATPase (V-ATPase). V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.	0.543
ARL8	Esi_0192_0021	D7FT57	D8LHG8	ARL8, ARF-like Ras superfamily GTPase; Belongs to the small GTPase superfamily. Arf family.	Uncharacterized protein.	0.536
ARL8	Esi_0243_0031	D7FT57	D7FT16	ARL8, ARF-like Ras superfamily GTPase; Belongs to the small GTPase superfamily. Arf family.	N_BRCA1_IG domain-containing protein.	0.458
ARL8	Esi_0295_0030	D7FT57	D7FVM2	ARL8, ARF-like Ras superfamily GTPase; Belongs to the small GTPase superfamily. Arf family.	Carbohydrate kinase, FGGY.	0.455
ARL8	Esi_0302_0002	D7FT57	D7FWC3	ARL8, ARF-like Ras superfamily GTPase; Belongs to the small GTPase superfamily. Arf family.	Uncharacterized protein.	0.455
ARL8	Esi_1053_0006	D7FT57	D7FH73	ARL8, ARF-like Ras superfamily GTPase; Belongs to the small GTPase superfamily. Arf family.	V-ATPase_H_C domain-containing protein.	0.472
Atg8	Esi_0002_0045	D7G2U5	D7FPY6	Autophagy-related protein.	V-type proton ATPase subunit a; Essential component of the vacuolar proton pump (V-ATPase), a multimeric enzyme that catalyzes the translocation of protons across the membranes. Required for assembly and activity of the V-ATPase.	0.414
Atg8	Esi_0015_0112	D7G2U5	D8LFK8	Autophagy-related protein.	N_BRCA1_IG domain-containing protein.	0.999
Atg8	Esi_0057_0068	D7G2U5	D7G4J4	Autophagy-related protein.	RING-type domain-containing protein.	0.974
Atg8	Esi_0192_0021	D7G2U5	D8LHG8	Autophagy-related protein.	Uncharacterized protein.	0.653
Atg8	Esi_0243_0031	D7G2U5	D7FT16	Autophagy-related protein.	N_BRCA1_IG domain-containing protein.	0.999