(66 nodes) DEAD/DEAH box helicase domain network (Ectocarpus siliculosus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Esi_0019_0085	RNA helicase. (846 aa)
	Esi_0020_0060	Uncharacterized protein. (1882 aa)
	Esi_0020_0094	Uncharacterized protein. (2195 aa)
	Esi_0222_0004	DEAD box helicase DEAD/DEAH box helicase-like protein (Partial). (708 aa)
	Esi_0024_0135	DEAD box helicase. (1339 aa)
	Esi_0046_0082	DEAD box helicase. (806 aa)
	Esi_0048_0042	DEAD box helicase. (694 aa)
	Esi_0033_0067	ATP-dependent DNA helicase; Belongs to the helicase family. RecQ subfamily. (807 aa)
	Esi_0347_0025	annotation not available (1034 aa)
	Esi_0349_0026	DEAD box helicase. (848 aa)
	Esi_0491_0010	DEAD box helicase. (479 aa)
	Esi_0050_0056	DEAD box helicase. (1408 aa)
	Esi_0058_0055	DEAD box helicase. (1435 aa)
	Esi_0065_0074	DEAD box helicase; Belongs to the DEAD box helicase family. (657 aa)
	Esi_0085_0011	DEAD box helicase; Belongs to the DEAD box helicase family. (518 aa)
	Esi_0088_0014	DEAD box helicase. (2200 aa)
	Esi_0121_0044	Uncharacterized protein. (815 aa)
	Esi_0121_0062	DEAD box helicase. (1012 aa)
	Esi_0013_0100	DEAD box helicase. (923 aa)
	Esi_0013_0199	DEAD box helicase; Belongs to the DEAD box helicase family. (584 aa)
	Esi_0014_0012	RNA helicase. (1228 aa)
	Esi_0098_0023	ATP-dependent DNA helicase; Belongs to the helicase family. RecQ subfamily. (559 aa)
	Esi_0112_0031	Uncharacterized protein. (1339 aa)
	Esi_0379_0021	DEAD box helicase. (774 aa)
	Esi_0381_0006	DEAD box helicase. (488 aa)
	Esi_0381_0009	Helicase ATP-binding domain-containing protein. (1231 aa)
	DCL1	Dicer-like 3. (1557 aa)
	Esi_0254_0010	DEAD box helicase. (660 aa)
	Esi_0076_0013	DEAD box helicase. (465 aa)
	Esi_0095_0027	ATP-dependent DNA helicase; Belongs to the helicase family. RecQ subfamily. (645 aa)
	Esi_0099_0079	DEAD box helicase. (610 aa)
	Esi_0400_0014	annotation not available (1533 aa)
	Esi_0028_0047	DEAD box helicase. (827 aa)
	Esi_0028_0100	DEAD box helicase. (865 aa)
	Esi_0036_0155	DEAD/DEAH box helicase domain-containing protein. (990 aa)
	Esi_0412_0003	Uncharacterized protein. (1170 aa)
	Esi_0643_0003	DEAD domain-containing protein. (324 aa)
	Esi_0007_0206	DEAD box helicase; Belongs to the DEAD box helicase family. (467 aa)
	Esi_0072_0059	Uncharacterized protein. (1514 aa)
	Esi_0074_0084	Uncharacterized protein. (2264 aa)
	Esi_0298_0016	DEAD box helicase. (613 aa)
	Esi_0045_0059	Uncharacterized protein. (711 aa)
	Esi_0045_0080	Uncharacterized protein. (1386 aa)
	Esi_0046_0003	DEAD box helicase; Belongs to the DEAD box helicase family. (694 aa)
	Esi_0014_0190	DEAD box helicase. (572 aa)
	Esi_0104_0010	DEAD box helicase; Belongs to the DEAD box helicase family. (519 aa)
	Esi_0115_0054	ATP-dependent DNA helicase; Belongs to the helicase family. RecQ subfamily. (678 aa)
	Esi_0134_0087	RNA helicase. (644 aa)
	Esi_0134_0090	DEAD box helicase. (1630 aa)
	Esi_0135_0024	DEAD box helicase. (944 aa)
	Esi_0162_0016	Uncharacterized protein; Belongs to the DEAD box helicase family. (402 aa)
	Esi_0163_0012	DEAD box helicase. (1907 aa)
	Esi_0177_0016	Uncharacterized protein. (2343 aa)
	Esi_0179_0060	DEAD box helicase. (818 aa)
	Esi_0194_0042	ATP-dependent DNA helicase RecG. (1002 aa)
	EIF4A	Eukaryotic initiation factor 4A; Belongs to the DEAD box helicase family. (404 aa)
	Esi_0021_0125	DEAD box helicase. (275 aa)
	Esi_0021_0019	DEAD box helicase. (1537 aa)
	Esi_0021_0079	DEAD box helicase; Belongs to the DEAD box helicase family. (516 aa)
	Esi_0211_0014	DEAD box helicase. (662 aa)
	Esi_0216_0004	ATP-dependent RNA helicase; Belongs to the DEAD box helicase family. DDX54/DBP10 subfamily. (819 aa)
	Esi_0226_0048	Uncharacterized protein. (1403 aa)
	Esi_0186_0022	DEAD box helicase; Belongs to the DEAD box helicase family. (699 aa)
	Esi_0233_0002	DEAD box helicase. (659 aa)
	Esi_0233_0037	DEAD box helicase. (839 aa)
	Esi_0265_0027	DEAD box helicase; Belongs to the DEAD box helicase family. (614 aa)

Your Current Organism:

Ectocarpus siliculosus

NCBI taxonomy Id: 2880
Other names: E. siliculosus

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DCL1	EIF4A	D7FZW2	D7FQL1	Dicer-like 3.	Eukaryotic initiation factor 4A; Belongs to the DEAD box helicase family.	0.496
DCL1	Esi_0007_0206	D7FZW2	D8LRW1	Dicer-like 3.	DEAD box helicase; Belongs to the DEAD box helicase family.	0.496
DCL1	Esi_0013_0100	D7FZW2	D8LE98	Dicer-like 3.	DEAD box helicase.	0.496
DCL1	Esi_0013_0199	D7FZW2	D8LEE8	Dicer-like 3.	DEAD box helicase; Belongs to the DEAD box helicase family.	0.496
DCL1	Esi_0014_0012	D7FZW2	D8LES3	Dicer-like 3.	RNA helicase.	0.536
DCL1	Esi_0014_0190	D7FZW2	D8LF19	Dicer-like 3.	DEAD box helicase.	0.496
DCL1	Esi_0019_0085	D7FZW2	D8LH86	Dicer-like 3.	RNA helicase.	0.603
DCL1	Esi_0021_0125	D7FZW2	D7FQZ1	Dicer-like 3.	DEAD box helicase.	0.585
DCL1	Esi_0024_0135	D7FZW2	D8LJ88	Dicer-like 3.	DEAD box helicase.	0.555
DCL1	Esi_0028_0047	D7FZW2	D8LJZ7	Dicer-like 3.	DEAD box helicase.	0.496
DCL1	Esi_0028_0100	D7FZW2	D8LK23	Dicer-like 3.	DEAD box helicase.	0.496
DCL1	Esi_0046_0003	D7FZW2	D7G1S4	Dicer-like 3.	DEAD box helicase; Belongs to the DEAD box helicase family.	0.520
DCL1	Esi_0046_0082	D7FZW2	D7G1X1	Dicer-like 3.	DEAD box helicase.	0.541
DCL1	Esi_0048_0042	D7FZW2	D7G2L3	Dicer-like 3.	DEAD box helicase.	0.496
DCL1	Esi_0058_0055	D7FZW2	D7G4S8	Dicer-like 3.	DEAD box helicase.	0.496
DCL1	Esi_0065_0074	D7FZW2	D7G5I4	Dicer-like 3.	DEAD box helicase; Belongs to the DEAD box helicase family.	0.536
DCL1	Esi_0074_0084	D7FZW2	D8LSM0	Dicer-like 3.	Uncharacterized protein.	0.435
DCL1	Esi_0076_0013	D7FZW2	D8LSP0	Dicer-like 3.	DEAD box helicase.	0.496
DCL1	Esi_0085_0011	D7FZW2	D7G7Q3	Dicer-like 3.	DEAD box helicase; Belongs to the DEAD box helicase family.	0.502
DCL1	Esi_0099_0079	D7FZW2	D8LUB6	Dicer-like 3.	DEAD box helicase.	0.517