(43 nodes) Ribonuclease H superfamily network (Ectocarpus siliculosus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Esi_0005_0027	DDE_3 domain-containing protein. (674 aa)
	Esi_0228_0001	3'-5' exonuclease domain-containing protein. (216 aa)
	AGO1	Argonaute 1. (966 aa)
	Esi_0002_0096	Exonuclease domain-containing protein. (983 aa)
	Esi_0194_0042	ATP-dependent DNA helicase RecG. (1002 aa)
	Esi_0018_0133	Uncharacterized protein. (705 aa)
	Esi_0166_0003	Ribonuclease; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids; Belongs to the RNase HII family. (350 aa)
	Esi_0164_0025	WRNEXO (WERNER SYNDROME-LIKE EXONUCLEASE) 3'-5' exonuclease/ nucleic acid binding. (248 aa)
	Esi_0163_0012	DEAD box helicase. (1907 aa)
	Esi_0156_0024	Mar14 transposase. (445 aa)
	Esi_0140_0042	DNA polymerase. (1219 aa)
	Esi_1318_0001	Uncharacterized protein. (333 aa)
	Esi_0124_0050	3'-5' exonuclease domain-containing protein. (955 aa)
	Esi_0114_0018	Similar to Werner syndrome protein. (727 aa)
	Esi_0120_0073	Uncharacterized protein. (582 aa)
	Esi_0115_0081	DNA polymerase. (1612 aa)
	Esi_0108_0014	Ribonuclease HI. (355 aa)
	Esi_0044_0106	RanBD1 domain-containing protein. (648 aa)
	Esi_0041_0002	Pol1-like DNA polymerase. (1473 aa)
	Esi_0023_0036	Uncharacterized protein. (412 aa)
	Esi_0006_0016	DNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family. (1416 aa)
	Esi_0059_0138	3'-5' exonuclease family protein. (192 aa)
	Esi_0116_0024	Uncharacterized protein. (372 aa)
	Esi_0000_0116	Exonuclease domain-containing protein. (458 aa)
	Esi_0087_0017	Uncharacterized protein. (3112 aa)
	Esi_0080_0004	Exonuclease domain-containing protein. (1062 aa)
	Esi_0079_0036	Uncharacterized protein. (1026 aa)
	Esi_0006_0051	Similarity to ribonuclease D (RNase D). (1260 aa)
	Esi_0118_0050	Uncharacterized protein. (945 aa)
	Esi_0073_0118	DNA polymerase. (1097 aa)
	Esi_0521_0008	3'-5' exonuclease domain-containing protein. (818 aa)
	Esi_0404_0005	3'-5' exonuclease domain-containing protein. (649 aa)
	Esi_0039_0083	Phosphotransferase. (528 aa)
	Esi_0039_0081	Ribonuclease H. (523 aa)
	Esi_0029_0066	annotation not available (249 aa)
	Esi_0056_0124	Transposase. (653 aa)
	Esi_0052_0138	EsV-1-139. (269 aa)
	Esi_0052_0133	EsV-1-126. (206 aa)
	Esi_0052_0261	EsV-1-108. (226 aa)
	DNA-2	DNA polymerase. (1047 aa)
	Esi_0516_0003	Exonuclease domain-containing protein. (722 aa)
	Esi_0069_0101	Ribonuclease; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids; Belongs to the RNase HII family. (320 aa)
	Esi_0006_0068	HRDC domain-containing protein. (1278 aa)

Your Current Organism:

Ectocarpus siliculosus

NCBI taxonomy Id: 2880
Other names: E. siliculosus

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AGO1	Esi_0018_0133	D7FQK3	D7FNN0	Argonaute 1.	Uncharacterized protein.	0.404
AGO1	Esi_0023_0036	D7FQK3	D8LIU5	Argonaute 1.	Uncharacterized protein.	0.461
DNA-2	Esi_0006_0016	D8LPC4	D8LQC0	DNA polymerase.	DNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family.	0.894
DNA-2	Esi_0023_0036	D8LPC4	D8LIU5	DNA polymerase.	Uncharacterized protein.	0.404
DNA-2	Esi_0029_0066	D8LPC4	D7FVB3	DNA polymerase.	annotation not available	0.836
DNA-2	Esi_0069_0101	D8LPC4	D8LRP9	DNA polymerase.	Ribonuclease; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids; Belongs to the RNase HII family.	0.631
DNA-2	Esi_0087_0017	D8LPC4	D7G846	DNA polymerase.	Uncharacterized protein.	0.643
DNA-2	Esi_0114_0018	D8LPC4	D7FIV1	DNA polymerase.	Similar to Werner syndrome protein.	0.836
DNA-2	Esi_0115_0081	D8LPC4	D7FI10	DNA polymerase.	DNA polymerase.	0.927
DNA-2	Esi_0124_0050	D8LPC4	D7FIV2	DNA polymerase.	3'-5' exonuclease domain-containing protein.	0.836
DNA-2	Esi_0166_0003	D8LPC4	D7FM98	DNA polymerase.	Ribonuclease; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids; Belongs to the RNase HII family.	0.631
DNA-2	Esi_0404_0005	D8LPC4	D7G0J2	DNA polymerase.	3'-5' exonuclease domain-containing protein.	0.836
DNA-2	Esi_0521_0008	D8LPC4	D7G3Q9	DNA polymerase.	3'-5' exonuclease domain-containing protein.	0.836
Esi_0000_0116	Esi_0041_0002	D8LAZ6	D8LMQ5	Exonuclease domain-containing protein.	Pol1-like DNA polymerase.	0.491
Esi_0000_0116	Esi_0052_0133	D8LAZ6	D8LPF2	Exonuclease domain-containing protein.	EsV-1-126.	0.872
Esi_0000_0116	Esi_0052_0138	D8LAZ6	D8LPG5	Exonuclease domain-containing protein.	EsV-1-139.	0.760
Esi_0000_0116	Esi_0108_0014	D8LAZ6	D7FHF8	Exonuclease domain-containing protein.	Ribonuclease HI.	0.627
Esi_0000_0116	Esi_0140_0042	D8LAZ6	D7FK42	Exonuclease domain-containing protein.	DNA polymerase.	0.491
Esi_0000_0116	Esi_0163_0012	D8LAZ6	D7FM15	Exonuclease domain-containing protein.	DEAD box helicase.	0.491
Esi_0000_0116	Esi_0194_0042	D8LAZ6	D7FPN7	Exonuclease domain-containing protein.	ATP-dependent DNA helicase RecG.	0.478