(13 nodes) Lysine catabolism network (Ectocarpus siliculosus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Esi_0073_0036	Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex. (409 aa)
	Esi_0108_0050	Uncharacterized protein. (514 aa)
	Esi_0136_0032	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family. (186 aa)
	Esi_0136_0033	Belongs to the mitochondrial carrier (TC 2.A.29) family. (114 aa)
	Esi_0144_0069	Uncharacterized protein. (612 aa)
	OGDC	Oxoglutarate dehydrogenase, N-terminal part. (866 aa)
	OGDC-2	Oxoglutarate dehydrogenase E1 subunit, C-terminal. (114 aa)
	Esi_0305_0003	Dihydrolipoamide succinyltransferase. (300 aa)
	Esi_0098_0083	Mercuric reductase A. (399 aa)
	GCSL	Dihydrolipoyl dehydrogenase. (502 aa)
	GCSL-2	Dihydrolipoamide dehydrogenase. (544 aa)
	Esi_0006_0185	Mercuric reductase. (573 aa)
	OCD	Ornithine cyclodeaminase. (348 aa)

Your Current Organism:

Ectocarpus siliculosus

NCBI taxonomy Id: 2880
Other names: E. siliculosus

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Esi_0006_0185	Esi_0073_0036	D8LQL6	D7G687	Mercuric reductase.	Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex.	0.911
Esi_0006_0185	Esi_0305_0003	D8LQL6	D7FWF4	Mercuric reductase.	Dihydrolipoamide succinyltransferase.	0.911
Esi_0006_0185	OGDC	D8LQL6	D7FKZ0	Mercuric reductase.	Oxoglutarate dehydrogenase, N-terminal part.	0.882
Esi_0006_0185	OGDC-2	D8LQL6	D7FKZ1	Mercuric reductase.	Oxoglutarate dehydrogenase E1 subunit, C-terminal.	0.882
Esi_0073_0036	Esi_0006_0185	D7G687	D8LQL6	Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex.	Mercuric reductase.	0.911
Esi_0073_0036	Esi_0098_0083	D7G687	D7G9I3	Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex.	Mercuric reductase A.	0.911
Esi_0073_0036	Esi_0108_0050	D7G687	D7FHH4	Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex.	Uncharacterized protein.	0.911
Esi_0073_0036	Esi_0144_0069	D7G687	D7FKJ5	Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex.	Uncharacterized protein.	0.911
Esi_0073_0036	Esi_0305_0003	D7G687	D7FWF4	Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex.	Dihydrolipoamide succinyltransferase.	0.499
Esi_0073_0036	GCSL	D7G687	D8LBF4	Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex.	Dihydrolipoyl dehydrogenase.	0.954
Esi_0073_0036	GCSL-2	D7G687	D8LL48	Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex.	Dihydrolipoamide dehydrogenase.	0.954
Esi_0073_0036	OGDC	D7G687	D7FKZ0	Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex.	Oxoglutarate dehydrogenase, N-terminal part.	0.996
Esi_0073_0036	OGDC-2	D7G687	D7FKZ1	Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex.	Oxoglutarate dehydrogenase E1 subunit, C-terminal.	0.996
Esi_0098_0083	Esi_0073_0036	D7G9I3	D7G687	Mercuric reductase A.	Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex.	0.911
Esi_0098_0083	Esi_0305_0003	D7G9I3	D7FWF4	Mercuric reductase A.	Dihydrolipoamide succinyltransferase.	0.911
Esi_0098_0083	OGDC	D7G9I3	D7FKZ0	Mercuric reductase A.	Oxoglutarate dehydrogenase, N-terminal part.	0.882
Esi_0098_0083	OGDC-2	D7G9I3	D7FKZ1	Mercuric reductase A.	Oxoglutarate dehydrogenase E1 subunit, C-terminal.	0.882
Esi_0108_0050	Esi_0073_0036	D7FHH4	D7G687	Uncharacterized protein.	Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex.	0.911
Esi_0108_0050	Esi_0305_0003	D7FHH4	D7FWF4	Uncharacterized protein.	Dihydrolipoamide succinyltransferase.	0.911
Esi_0108_0050	OGDC	D7FHH4	D7FKZ0	Uncharacterized protein.	Oxoglutarate dehydrogenase, N-terminal part.	0.882