(32 nodes) RNA Polymerase I Transcription network (Ectocarpus siliculosus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Esi_0101_0047	Uncharacterized protein. (460 aa)
	Esi_0115_0040	General transcription factor IIH subunit 4; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. (534 aa)
	Esi_0154_0037	Uncharacterized protein. (880 aa)
	Esi_0173_0001	FirrV-1-B30. (446 aa)
	Esi_0173_0004	FirrV-1-B30. (491 aa)
	RPA	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1234 aa)
	Esi_0183_0037	RNA polymerase A(I) large subunit. (651 aa)
	Esi_0189_0039	RPOLD domain-containing protein. (361 aa)
	Esi_0002_0278	Uncharacterized protein. (255 aa)
	Esi_0217_0013	General transcription factor IIH subunit. (412 aa)
	Esi_0245_0021	Nitroreductase-like protein. (317 aa)
	Esi_0029_0017	Uncharacterized protein. (358 aa)
	Esi_0294_0026	Uncharacterized protein. (63 aa)
	Esi_0037_0094	Histone H2B; Belongs to the histone H2B family. (116 aa)
	Esi_0035_0115	Uncharacterized protein. (223 aa)
	Esi_0035_0116	Uncharacterized protein. (117 aa)
	Esi_0042_0003	SprT-like domain-containing protein. (1064 aa)
	Esi_0042_0019	Transcription initiation factor TFIID. (214 aa)
	Esi_0046_0105	Uncharacterized protein. (212 aa)
	Esi_0000_0653	RING-type domain-containing protein. (304 aa)
	Esi_0012_0116	Uncharacterized protein. (884 aa)
	Esi_0121_0017	Helicase ATP-binding domain-containing protein. (824 aa)
	Esi_0151_0057	TFIIH subunit (Partial). (698 aa)
	Esi_0182_0049	Uncharacterized protein; Belongs to the RNA polymerase beta chain family. (1050 aa)
	Esi_0196_0052	Uncharacterized protein. (68 aa)
	Esi_0031_0123	Uncharacterized protein. (94 aa)
	Esi_0340_0024	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (115 aa)
	Esi_0384_0016	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively. (144 aa)
	Esi_0409_0021	Nitroreductase domain-containing protein. (316 aa)
	Esi_0005_0010	Uncharacterized protein. (512 aa)
	Esi_0052_0103	EsV-1-66. (476 aa)
	cyc-4	Cyclin H; Belongs to the cyclin family. (378 aa)

Your Current Organism:

Ectocarpus siliculosus

NCBI taxonomy Id: 2880
Other names: E. siliculosus

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Esi_0000_0653	Esi_0005_0010	D8LBU7	D8LNL6	RING-type domain-containing protein.	Uncharacterized protein.	0.670
Esi_0000_0653	Esi_0012_0116	D8LBU7	D8LDJ3	RING-type domain-containing protein.	Uncharacterized protein.	0.980
Esi_0000_0653	Esi_0029_0017	D8LBU7	D7FV81	RING-type domain-containing protein.	Uncharacterized protein.	0.965
Esi_0000_0653	Esi_0031_0123	D8LBU7	D8LKY3	RING-type domain-containing protein.	Uncharacterized protein.	0.985
Esi_0000_0653	Esi_0035_0115	D8LBU7	D7FYW3	RING-type domain-containing protein.	Uncharacterized protein.	0.986
Esi_0000_0653	Esi_0035_0116	D8LBU7	D7FYW4	RING-type domain-containing protein.	Uncharacterized protein.	0.986
Esi_0000_0653	Esi_0037_0094	D8LBU7	D7FWI8	RING-type domain-containing protein.	Histone H2B; Belongs to the histone H2B family.	0.658
Esi_0000_0653	Esi_0042_0019	D8LBU7	D7G0V1	RING-type domain-containing protein.	Transcription initiation factor TFIID.	0.965
Esi_0000_0653	Esi_0046_0105	D8LBU7	D7G1Y9	RING-type domain-containing protein.	Uncharacterized protein.	0.984
Esi_0000_0653	Esi_0052_0103	D8LBU7	D8LP98	RING-type domain-containing protein.	EsV-1-66.	0.980
Esi_0000_0653	Esi_0115_0040	D8LBU7	D7FHY7	RING-type domain-containing protein.	General transcription factor IIH subunit 4; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family.	0.994
Esi_0000_0653	Esi_0121_0017	D8LBU7	D8LDN2	RING-type domain-containing protein.	Helicase ATP-binding domain-containing protein.	0.999
Esi_0000_0653	Esi_0151_0057	D8LBU7	D8LFT0	RING-type domain-containing protein.	TFIIH subunit (Partial).	0.994
Esi_0000_0653	Esi_0173_0001	D8LBU7	D7FN04	RING-type domain-containing protein.	FirrV-1-B30.	0.429
Esi_0000_0653	Esi_0173_0004	D8LBU7	D7FN07	RING-type domain-containing protein.	FirrV-1-B30.	0.429
Esi_0000_0653	Esi_0182_0049	D8LBU7	D8LGZ7	RING-type domain-containing protein.	Uncharacterized protein; Belongs to the RNA polymerase beta chain family.	0.893
Esi_0000_0653	Esi_0183_0037	D8LBU7	D7FNY3	RING-type domain-containing protein.	RNA polymerase A(I) large subunit.	0.677
Esi_0000_0653	Esi_0189_0039	D8LBU7	D7FPF8	RING-type domain-containing protein.	RPOLD domain-containing protein.	0.967
Esi_0000_0653	Esi_0196_0052	D8LBU7	D8LHK5	RING-type domain-containing protein.	Uncharacterized protein.	0.985
Esi_0000_0653	Esi_0217_0013	D8LBU7	D7FRP7	RING-type domain-containing protein.	General transcription factor IIH subunit.	0.996