(52 nodes) Starch and sucrose metabolism network (Ectocarpus siliculosus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Esi_0000_0270	Glucokinase. (498 aa)
	HSP-5	GrpE protein homolog; Essential component of the PAM complex, a complex required for the translocation of transit peptide-containing proteins from the inner membrane into the mitochondrial matrix in an ATP-dependent manner; Belongs to the GrpE family. (281 aa)
	TPP-2	Trehalose 6-phosphate phosphatase; Removes the phosphate from trehalose 6-phosphate to produce free trehalose. (316 aa)
	Esi_0129_0017	Uncharacterized protein. (748 aa)
	Esi_0145_0071	Uncharacterized protein. (422 aa)
	Esi_0181_0046	2OG-Fe(II) oxygenase. (349 aa)
	Esi_0301_0021	Uncharacterized protein. (377 aa)
	Esi_0037_0103	Uncharacterized protein. (350 aa)
	TPS-6	Trehalose 6-phosphate synthase, family GT20 / Trehalose 6-phosphate phosphatase. (857 aa)
	Esi_0430_0005	Uncharacterized protein. (1071 aa)
	Esi_0060_0128	Glucose-6-phosphate isomerase; Belongs to the GPI family. (559 aa)
	TPS-7	Trehalose 6-phosphate synthase, family GT20 / Trehalose 6-phosphate phosphatase. (991 aa)
	Esi_0069_0025	YqgFc domain-containing protein. (296 aa)
	Esi_0074_0089	Co-chaperone grpE family protein. (337 aa)
	Esi_0076_0113	MAGE domain-containing protein. (272 aa)
	Esi_0081_0103	Fe2OG dioxygenase domain-containing protein. (484 aa)
	Esi_0009_0170	DAO domain-containing protein. (402 aa)
	Esi_0090_0059	Uncharacterized protein. (696 aa)
	Esi_0105_0002	Uncharacterized protein; Belongs to the GrpE family. (250 aa)
	Esi_0108_0072	Uncharacterized protein. (397 aa)
	Esi_0122_0026	Uncharacterized protein. (621 aa)
	Esi_1232_0001	Uncharacterized protein. (238 aa)
	Esi_0144_0004	UTP--glucose-1-phosphate uridylyltransferase. (526 aa)
	ALGC	Phosphomannomutase/phosphoglucomutase. (549 aa)
	ALGC-2	Phosphomannomutase/phosphoglucomutase, C-terminal. (100 aa)
	TPS	Trehalose 6-phosphate synthase, family GT20 / Trehalose 6-phosphate phosphatase. (1220 aa)
	TRE	Trehalase N-terminal, family GH37. (404 aa)
	Esi_0193_0029	1,3-beta-glucan synthase, family GT48. (1931 aa)
	Esi_0199_0043	Uncharacterized protein. (297 aa)
	Esi_0199_0058	SET domain-containing protein. (493 aa)
	Esi_0002_0317	Uncharacterized protein. (618 aa)
	Esi_0211_0047	Uncharacterized protein. (407 aa)
	Esi_0211_0048	Uncharacterized protein. (110 aa)
	TPS-2	Trehalose 6-phosphate synthase, family GT20 / Trehalose 6-phosphate phosphatase. (1012 aa)
	Esi_0246_0030	Cog4 domain-containing protein. (957 aa)
	Esi_0265_0026	Uncharacterized protein. (681 aa)
	Esi_0266_0033	Glucose-6-phosphate isomerase, cytosolic. (308 aa)
	Esi_0278_0001	Uncharacterized protein; Belongs to the phosphohexose mutase family. (438 aa)
	Esi_0033_0138	1,3-beta-glucan synthase, family GT48. (2013 aa)
	Esi_0338_0032	1,3-beta-glucan synthase, family GT48. (1394 aa)
	Esi_0035_0029	Uncharacterized protein. (223 aa)
	Esi_0035_0077	MINDY_DUB domain-containing protein. (507 aa)
	TPS-4	Trehalose 6-phosphate synthase, family GT20 / Trehalose 6-phosphate phosphatase. (1243 aa)
	Esi_0462_0021	SET domain-containing protein. (619 aa)
	Esi_0048_0013	Alpha,alpha-trehalose-phosphate synthase. (777 aa)
	TPS-5	Trehalose 6-phosphate synthase, family GT20 / Trehalose 6-phosphate phosphatase. (1115 aa)
	Esi_0626_0005	Glucose-6-phosphate isomerase; Belongs to the GPI family. (305 aa)
	Esi_0636_0003	Uncharacterized protein. (366 aa)
	Esi_0636_0005	Arginine/ornithine transport system ATPase. (177 aa)
	TRE-2	Trehalase C-terminal, family GH37. (427 aa)
	Esi_0087_0031	Uncharacterized protein. (351 aa)
	TPP	Trehalose-6-phosphate phosphatase. (391 aa)

Your Current Organism:

Ectocarpus siliculosus

NCBI taxonomy Id: 2880
Other names: E. siliculosus

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ALGC	ALGC-2	D7FKV1	D7FKV2	Phosphomannomutase/phosphoglucomutase.	Phosphomannomutase/phosphoglucomutase, C-terminal.	0.436
ALGC	Esi_0000_0270	D7FKV1	D8LB65	Phosphomannomutase/phosphoglucomutase.	Glucokinase.	0.713
ALGC	Esi_0002_0317	D7FKV1	D7FQE9	Phosphomannomutase/phosphoglucomutase.	Uncharacterized protein.	0.780
ALGC	Esi_0060_0128	D7FKV1	D8LQV8	Phosphomannomutase/phosphoglucomutase.	Glucose-6-phosphate isomerase; Belongs to the GPI family.	0.614
ALGC	Esi_0081_0103	D7FKV1	D8LTC5	Phosphomannomutase/phosphoglucomutase.	Fe2OG dioxygenase domain-containing protein.	0.625
ALGC	Esi_0144_0004	D7FKV1	D7FKF0	Phosphomannomutase/phosphoglucomutase.	UTP--glucose-1-phosphate uridylyltransferase.	0.762
ALGC	Esi_0181_0046	D7FKV1	D8LGV3	Phosphomannomutase/phosphoglucomutase.	2OG-Fe(II) oxygenase.	0.625
ALGC	Esi_0266_0033	D7FKV1	D7FU67	Phosphomannomutase/phosphoglucomutase.	Glucose-6-phosphate isomerase, cytosolic.	0.614
ALGC	Esi_0430_0005	D7FKV1	D8LN90	Phosphomannomutase/phosphoglucomutase.	Uncharacterized protein.	0.780
ALGC	Esi_0626_0005	D7FKV1	D7G558	Phosphomannomutase/phosphoglucomutase.	Glucose-6-phosphate isomerase; Belongs to the GPI family.	0.614
ALGC-2	ALGC	D7FKV2	D7FKV1	Phosphomannomutase/phosphoglucomutase, C-terminal.	Phosphomannomutase/phosphoglucomutase.	0.436
ALGC-2	Esi_0000_0270	D7FKV2	D8LB65	Phosphomannomutase/phosphoglucomutase, C-terminal.	Glucokinase.	0.713
ALGC-2	Esi_0002_0317	D7FKV2	D7FQE9	Phosphomannomutase/phosphoglucomutase, C-terminal.	Uncharacterized protein.	0.780
ALGC-2	Esi_0060_0128	D7FKV2	D8LQV8	Phosphomannomutase/phosphoglucomutase, C-terminal.	Glucose-6-phosphate isomerase; Belongs to the GPI family.	0.614
ALGC-2	Esi_0081_0103	D7FKV2	D8LTC5	Phosphomannomutase/phosphoglucomutase, C-terminal.	Fe2OG dioxygenase domain-containing protein.	0.625
ALGC-2	Esi_0144_0004	D7FKV2	D7FKF0	Phosphomannomutase/phosphoglucomutase, C-terminal.	UTP--glucose-1-phosphate uridylyltransferase.	0.762
ALGC-2	Esi_0181_0046	D7FKV2	D8LGV3	Phosphomannomutase/phosphoglucomutase, C-terminal.	2OG-Fe(II) oxygenase.	0.625
ALGC-2	Esi_0266_0033	D7FKV2	D7FU67	Phosphomannomutase/phosphoglucomutase, C-terminal.	Glucose-6-phosphate isomerase, cytosolic.	0.614
ALGC-2	Esi_0430_0005	D7FKV2	D8LN90	Phosphomannomutase/phosphoglucomutase, C-terminal.	Uncharacterized protein.	0.780
ALGC-2	Esi_0626_0005	D7FKV2	D7G558	Phosphomannomutase/phosphoglucomutase, C-terminal.	Glucose-6-phosphate isomerase; Belongs to the GPI family.	0.614