STRINGSTRING
ACI22188.1 ACI22188.1 ACI20731.1 ACI20731.1 csm1_1 csm1_1 csm2_1 csm2_1 csm3_1 csm3_1 csm4 csm4 csm5_1 csm5_1 ACI20589.1 ACI20589.1 ACI21257.1 ACI21257.1 ACI21809.1 ACI21809.1 cas6_1 cas6_1 ACI22076.1 ACI22076.1 ACI22012.1 ACI22012.1 ACI21264.1 ACI21264.1 lgt lgt ACI22093.1 ACI22093.1 ACI21877.1 ACI21877.1 csm1_2 csm1_2 csm2_2 csm2_2 csm3_2 csm3_2 ACI21655.1 ACI21655.1 csm5_2 csm5_2 cas6_2 cas6_2 ACI22136.1 ACI22136.1 cas2_1 cas2_1 cas1-1 cas1-1 ACI22190.1 ACI22190.1 cas2_2 cas2_2 ACI20940.1 ACI20940.1 ACI20784.1 ACI20784.1 ACI21322.1 ACI21322.1 ACI20558.1 ACI20558.1 ACI21472.1 ACI21472.1 ACI20415.1 ACI20415.1 ACI22148.1 ACI22148.1 ACI22002.1 ACI22002.1 ACI21720.1 ACI21720.1 ACI20870.1 ACI20870.1 ACI22123.1 ACI22123.1 ACI20945.1 ACI20945.1 ACI21338.1 ACI21338.1 ACI20192.1 ACI20192.1 ACI21601.1 ACI21601.1 cas6_3 cas6_3 cas3_1 cas3_1 ACI22182.1 ACI22182.1 ACI20839.1 ACI20839.1 ACI21727.1 ACI21727.1 ACI20830.1 ACI20830.1 cmr4 cmr4 ACI21634.1 ACI21634.1 ACI20390.1 ACI20390.1 csa5 csa5 ACI21195.1 ACI21195.1 ACI21964.1 ACI21964.1 cas5_1 cas5_1 cas4_1 cas4_1 cas1_1 cas1_1 ACI21520.1 ACI21520.1 ACI20567.1 ACI20567.1 ACI20720.1 ACI20720.1 ACI20290.1 ACI20290.1 ACI21190.1 ACI21190.1 ACI21007.1 ACI21007.1 ACI20578.1 ACI20578.1 ACI21908.1 ACI21908.1 ACI20414.1 ACI20414.1 ACI21213.1 ACI21213.1 ACI20421.1 ACI20421.1 ACI20798.1 ACI20798.1 ACI21295.1 ACI21295.1 ACI21707.1 ACI21707.1 ACI21144.1 ACI21144.1 ACI21531.1 ACI21531.1 ACI21078.1 ACI21078.1 ACI21358.1 ACI21358.1 ACI21095.1 ACI21095.1 ACI21555.1 ACI21555.1 ACI20990.1 ACI20990.1 ACI21269.1 ACI21269.1 ACI20713.1 ACI20713.1 ACI22031.1 ACI22031.1 ACI21498.1 ACI21498.1 ACI22069.1 ACI22069.1 ACI21370.1 ACI21370.1 ACI20248.1 ACI20248.1 cas2_3 cas2_3 ACI20706.1 ACI20706.1 cas1_2 cas1_2 cas4_2 cas4_2 ACI21876.1 ACI21876.1 cas3_2 cas3_2 cas5_2 cas5_2 cst2 cst2 cst1 cst1 cas6_4 cas6_4 ACI21239.1 ACI21239.1 ACI20679.1 ACI20679.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
ACI22188.1Hypothetical protein; Identified by glimmer; putative. (37 aa)
ACI20731.1CRISPR-associated protein, NE0113 family; Identified by match to protein family HMM TIGR02584. (356 aa)
csm1_1CRISPR-associated protein, Csm1 family; Identified by match to protein family HMM TIGR02578. (769 aa)
csm2_1CRISPR-associated protein, Csm2 family; Identified by match to protein family HMM TIGR01870. (149 aa)
csm3_1CRISPR-associated RAMP protein, Csm3 family; Identified by match to protein family HMM PF03787; match to protein family HMM TIGR02582. (261 aa)
csm4CRISPR-associated RAMP protein, Csm4 family; Identified by match to protein family HMM PF03787; match to protein family HMM TIGR01903. (327 aa)
csm5_1CRISPR-associated RAMP protein, Csm5 family; Identified by match to protein family HMM PF03787; match to protein family HMM TIGR01899. (383 aa)
ACI20589.1Hypothetical protein; Identified by glimmer; putative. (248 aa)
ACI21257.1Hypothetical protein; Identified by glimmer; putative. (383 aa)
ACI21809.1Hypothetical protein; Identified by glimmer; putative. (82 aa)
cas6_1CRISPR-associated protein Cas6; Identified by match to protein family HMM TIGR01877. (312 aa)
ACI22076.1Na/H+ antiporter; Identified by match to protein family HMM PF00999. (400 aa)
ACI22012.1Hypothetical protein; Identified by glimmer; putative. (111 aa)
ACI21264.1Conserved hypothetical protein. (150 aa)
lgtProlipoprotein diacylglyceryl transferase; Catalyzes the transfer of the diacylglyceryl group from phosphatidylglycerol to the sulfhydryl group of the N-terminal cysteine of a prolipoprotein, the first step in the formation of mature lipoproteins; Belongs to the Lgt family. (257 aa)
ACI22093.1Nucleotidyltransferase; Identified by match to protein family HMM PF01909. (115 aa)
ACI21877.1CRISPR-associated protein, NE0113 family; Identified by match to protein family HMM TIGR02584. (369 aa)
csm1_2CRISPR-associated protein, Csm1 family; Identified by match to protein family HMM TIGR02578. (861 aa)
csm2_2CRISPR-associated protein, Csm2 family; Identified by match to protein family HMM TIGR01870. (143 aa)
csm3_2CRISPR-associated RAMP protein, Csm3 family; Identified by match to protein family HMM PF03787; match to protein family HMM TIGR02582. (244 aa)
ACI21655.1CRISPR-associated protein, Csm4 family. (304 aa)
csm5_2CRISPR-associated RAMP protein, Csm5 family; Identified by match to protein family HMM PF03787; match to protein family HMM TIGR01899. (361 aa)
cas6_2CRISPR-associated protein Cas6; Identified by match to protein family HMM TIGR01877. (298 aa)
ACI22136.1Hypothetical protein; Identified by glimmer; putative. (116 aa)
cas2_1CRISPR-associated protein Cas2; CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain sequences complementary to antecedent mobile elements and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Functions as a ssRNA-specific endoribonuclease. Involved in the integration of spacer DNA into the CRISPR cassette. (92 aa)
cas1-1Crispr-associated protein Cas1; CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain spacers, sequences complementary to antecedent mobile elements, and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Acts as a dsDNA endonuclease. Involved in the integration of spacer DNA into the CRISPR cassette. (318 aa)
ACI22190.1Hypothetical protein; Identified by glimmer; putative. (272 aa)
cas2_2CRISPR-associated protein Cas2; CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain sequences complementary to antecedent mobile elements and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Functions as a ssRNA-specific endoribonuclease. Involved in the integration of spacer DNA into the CRISPR cassette. (91 aa)
ACI20940.1methylated-DNA--protein-cysteine methyltransferase; Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction: the enzyme is irreversibly inactivated. (157 aa)
ACI20784.1Intermediate filament protein:ATP/GTP-binding site motif A (P-loop):AAA ATPase; Identified by match to protein family HMM PF05673. (245 aa)
ACI21322.1Hypothetical protein; Identified by glimmer; putative. (64 aa)
ACI20558.1Hypothetical protein; Identified by glimmer; putative. (169 aa)
ACI21472.1Hypothetical protein; Identified by glimmer; putative. (41 aa)
ACI20415.1Transporter, auxin efflux carrier (AEC) family; Identified by match to protein family HMM PF03547. (324 aa)
ACI22148.1Conserved hypothetical protein; Identified by match to protein family HMM PF04308. (164 aa)
ACI22002.1Sodium/hydrogen exchanger family/TrkA domain protein; Identified by match to protein family HMM PF00999; match to protein family HMM PF02080; match to protein family HMM PF02254; Belongs to the monovalent cation:proton antiporter 2 (CPA2) transporter (TC 2.A.37) family. (661 aa)
ACI21720.1Iron ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005. (256 aa)
ACI20870.1iron(III) ABC transporter, permease protein; Identified by match to protein family HMM PF01032; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily. (333 aa)
ACI22123.1Periplasmic binding protein; Identified by match to protein family HMM PF01497. (315 aa)
ACI20945.1TonB-dependent receptor; Identified by match to protein family HMM PF00593; match to protein family HMM PF07715. (738 aa)
ACI21338.1Protein of unknown function; Identified by match to protein family HMM PF01934. (152 aa)
ACI20192.1Nucleotidyltransferase; Identified by match to protein family HMM PF01909. (134 aa)
ACI21601.1Conserved hypothetical protein; Identified by match to protein family HMM PF01980; match to protein family HMM TIGR00104. (129 aa)
cas6_3CRISPR-associated protein Cas6; CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain sequences complementary to antecedent mobile elements and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). (244 aa)
cas3_1CRISPR-associated helicase Cas3; Identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM TIGR01587. (543 aa)
ACI22182.1CRISPR-associated HD domain protein; Identified by match to protein family HMM TIGR01596. (241 aa)
ACI20839.1Hypothetical protein; Identified by glimmer; putative. (325 aa)
ACI21727.1Crispr-associated ramp protein; Identified by match to protein family HMM PF03787. (363 aa)
ACI20830.1Crispr-associated protein, Csx11 family; Identified by match to protein family HMM TIGR02682. (983 aa)
cmr4CRISPR-associated RAMP protein, Cmr4 family; Identified by match to protein family HMM PF03787; match to protein family HMM TIGR02580. (314 aa)
ACI21634.1Conserved hypothetical protein. (139 aa)
ACI20390.1Conserved protein, putative. (300 aa)
csa5CRISPR-associated protein, Csa5 family; Identified by match to protein family HMM TIGR01878. (473 aa)
ACI21195.1Nucleotidyltransferase. (38 aa)
ACI21964.1Crispr-associated autoregulator devr family; Identified by match to protein family HMM PF01905; match to protein family HMM TIGR01875. (330 aa)
cas5_1CRISPR-associated protein Cas5; Identified by match to protein family HMM TIGR01874; match to protein family HMM TIGR02593. (257 aa)
cas4_1CRISPR-associated protein Cas4; CRISPR (clustered regularly interspaced short palindromic repeat) is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain sequences complementary to antecedent mobile elements and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Belongs to the CRISPR-associated exonuclease Cas4 family. (167 aa)
cas1_1CRISPR-associated protein Cas1, HMARI/TNEAP subtype; CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain spacers, sequences complementary to antecedent mobile elements, and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Acts as a dsDNA endonuclease. Involved in the integration of spacer DNA into the CRISPR cassette. (330 aa)
ACI21520.1Hypothetical protein; Identified by glimmer; putative. (61 aa)
ACI20567.1Aminopeptidase. (375 aa)
ACI20720.1Conserved hypothetical protein; Identified by match to protein family HMM PF01910; match to protein family HMM TIGR00106. (101 aa)
ACI20290.1Universal stress protein, putative; Identified by match to protein family HMM PF00582. (278 aa)
ACI21190.1Mosc domain protein; Identified by match to protein family HMM PF03473. (144 aa)
ACI21007.1Conserved hypothetical protein. (94 aa)
ACI20578.1Conserved hypothetical protein. (77 aa)
ACI21908.1Conserved hypothetical protein. (148 aa)
ACI20414.1Protein of unknown function; Identified by match to protein family HMM PF01934. (150 aa)
ACI21213.1Lipoprotein, putative. (176 aa)
ACI20421.1Nucleotidyltransferase; Identified by match to protein family HMM PF01909. (130 aa)
ACI20798.1Hypothetical protein; Identified by glimmer; putative. (53 aa)
ACI21295.1CBS domain protein; Identified by match to protein family HMM PF00571. (133 aa)
ACI21707.1Conserved hypothetical protein; Identified by match to protein family HMM PF01865; match to protein family HMM TIGR00153. (210 aa)
ACI21144.1Sodium/phosphate symporter; Identified by match to protein family HMM PF01384. (311 aa)
ACI21531.1Nucleotidyltransferase, putative; Identified by match to protein family HMM PF01909. (131 aa)
ACI21078.1Protein of unknown function; Identified by match to protein family HMM PF01934. (140 aa)
ACI21358.1Nucleotidyltransferase, putative; Identified by match to protein family HMM PF01909. (131 aa)
ACI21095.1Protein of unknown function; Identified by match to protein family HMM PF01934. (140 aa)
ACI21555.1Conserved hypothetical protein. (127 aa)
ACI20990.1ChrB domain protein. (175 aa)
ACI21269.1Identified by match to protein family HMM PF07690. (382 aa)
ACI20713.1Universal stress protein, putative; Identified by match to protein family HMM PF00582. (282 aa)
ACI22031.1Sodium/phosphate symporter; Identified by match to protein family HMM PF01384. (318 aa)
ACI21498.1Nucleotidyltransferase domain, putative; Identified by match to protein family HMM PF01909. (118 aa)
ACI22069.1Protein of unknown function. (134 aa)
ACI21370.1Kef-type K+ transport system, membrane component; Identified by match to protein family HMM PF00999. (386 aa)
ACI20248.1Universal stress protein; Identified by match to protein family HMM PF00582. (141 aa)
cas2_3CRISPR-associated protein Cas2; CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain sequences complementary to antecedent mobile elements and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Functions as a ssRNA-specific endoribonuclease. Involved in the integration of spacer DNA into the CRISPR cassette. (88 aa)
ACI20706.1Hypothetical protein; Identified by glimmer; putative. (46 aa)
cas1_2CRISPR-associated protein Cas1, HMARI/TNEAP subtype; CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain spacers, sequences complementary to antecedent mobile elements, and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Acts as a dsDNA endonuclease. Involved in the integration of spacer DNA into the CRISPR cassette. (325 aa)
cas4_2CRISPR-associated protein Cas4; CRISPR (clustered regularly interspaced short palindromic repeat) is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain sequences complementary to antecedent mobile elements and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Belongs to the CRISPR-associated exonuclease Cas4 family. (173 aa)
ACI21876.1ATPase. (403 aa)
cas3_2CRISPR-associated helicase Cas3; Identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM TIGR01587; match to protein family HMM TIGR01596. (728 aa)
cas5_2CRISPR-associated protein Cas5; Identified by match to protein family HMM TIGR02593. (239 aa)
cst2CRISPR-associated regulatory protein, DevR family; Identified by match to protein family HMM TIGR01875; match to protein family HMM TIGR02585. (299 aa)
cst1CRISPR-associated CXXC_CXXC protein Cst1; Identified by match to protein family HMM TIGR01908. (554 aa)
cas6_4CRISPR-associated protein Cas6; Identified by match to protein family HMM PF01881; match to protein family HMM TIGR01877. (262 aa)
ACI21239.1Trk system potassium uptake protein TrkA (K(+)-uptake protein trkA); Identified by match to protein family HMM PF02080; match to protein family HMM PF02254. (446 aa)
ACI20679.1Trk system potassium uptake protein TrkH; Identified by match to protein family HMM PF02386; match to protein family HMM TIGR00933. (481 aa)
Your Current Organism:
Thermodesulfovibrio yellowstonii
NCBI taxonomy Id: 289376
Other names: T. yellowstonii DSM 11347, Thermodesulfovibrio yellowstonii DSM 11347
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