(17 nodes) Mixed, incl. Polymerase beta, nucleotidyltransferase, and tRNA nuclease HepT-like superfamily network (Thermodesulfovibrio yellowstonii)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ACI22148.1	Conserved hypothetical protein; Identified by match to protein family HMM PF04308. (164 aa)
	ACI21520.1	Hypothetical protein; Identified by glimmer; putative. (61 aa)
	ACI20567.1	Aminopeptidase. (375 aa)
	ACI20720.1	Conserved hypothetical protein; Identified by match to protein family HMM PF01910; match to protein family HMM TIGR00106. (101 aa)
	ACI20290.1	Universal stress protein, putative; Identified by match to protein family HMM PF00582. (278 aa)
	ACI21190.1	Mosc domain protein; Identified by match to protein family HMM PF03473. (144 aa)
	ACI21007.1	Conserved hypothetical protein. (94 aa)
	ACI20578.1	Conserved hypothetical protein. (77 aa)
	ACI21908.1	Conserved hypothetical protein. (148 aa)
	ACI20414.1	Protein of unknown function; Identified by match to protein family HMM PF01934. (150 aa)
	ACI21213.1	Lipoprotein, putative. (176 aa)
	ACI20421.1	Nucleotidyltransferase; Identified by match to protein family HMM PF01909. (130 aa)
	ACI20798.1	Hypothetical protein; Identified by glimmer; putative. (53 aa)
	ACI21531.1	Nucleotidyltransferase, putative; Identified by match to protein family HMM PF01909. (131 aa)
	ACI21078.1	Protein of unknown function; Identified by match to protein family HMM PF01934. (140 aa)
	ACI21358.1	Nucleotidyltransferase, putative; Identified by match to protein family HMM PF01909. (131 aa)
	ACI21095.1	Protein of unknown function; Identified by match to protein family HMM PF01934. (140 aa)

Your Current Organism:

Thermodesulfovibrio yellowstonii

NCBI taxonomy Id: 289376
Other names: T. yellowstonii DSM 11347, Thermodesulfovibrio yellowstonii DSM 11347

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ACI20290.1	ACI20414.1	THEYE_A1200	THEYE_A1208	Universal stress protein, putative; Identified by match to protein family HMM PF00582.	Protein of unknown function; Identified by match to protein family HMM PF01934.	0.551
ACI20290.1	ACI20421.1	THEYE_A1200	THEYE_A1211	Universal stress protein, putative; Identified by match to protein family HMM PF00582.	Nucleotidyltransferase; Identified by match to protein family HMM PF01909.	0.509
ACI20290.1	ACI20567.1	THEYE_A1200	THEYE_A1195	Universal stress protein, putative; Identified by match to protein family HMM PF00582.	Aminopeptidase.	0.450
ACI20290.1	ACI20578.1	THEYE_A1200	THEYE_A1206	Universal stress protein, putative; Identified by match to protein family HMM PF00582.	Conserved hypothetical protein.	0.551
ACI20290.1	ACI20720.1	THEYE_A1200	THEYE_A1199	Universal stress protein, putative; Identified by match to protein family HMM PF00582.	Conserved hypothetical protein; Identified by match to protein family HMM PF01910; match to protein family HMM TIGR00106.	0.773
ACI20290.1	ACI21007.1	THEYE_A1200	THEYE_A1205	Universal stress protein, putative; Identified by match to protein family HMM PF00582.	Conserved hypothetical protein.	0.551
ACI20290.1	ACI21190.1	THEYE_A1200	THEYE_A1201	Universal stress protein, putative; Identified by match to protein family HMM PF00582.	Mosc domain protein; Identified by match to protein family HMM PF03473.	0.705
ACI20290.1	ACI21213.1	THEYE_A1200	THEYE_A1209	Universal stress protein, putative; Identified by match to protein family HMM PF00582.	Lipoprotein, putative.	0.551
ACI20290.1	ACI21520.1	THEYE_A1200	THEYE_A1194	Universal stress protein, putative; Identified by match to protein family HMM PF00582.	Hypothetical protein; Identified by glimmer; putative.	0.450
ACI20290.1	ACI21908.1	THEYE_A1200	THEYE_A1207	Universal stress protein, putative; Identified by match to protein family HMM PF00582.	Conserved hypothetical protein.	0.551
ACI20414.1	ACI20290.1	THEYE_A1208	THEYE_A1200	Protein of unknown function; Identified by match to protein family HMM PF01934.	Universal stress protein, putative; Identified by match to protein family HMM PF00582.	0.551
ACI20414.1	ACI20421.1	THEYE_A1208	THEYE_A1211	Protein of unknown function; Identified by match to protein family HMM PF01934.	Nucleotidyltransferase; Identified by match to protein family HMM PF01909.	0.918
ACI20414.1	ACI20578.1	THEYE_A1208	THEYE_A1206	Protein of unknown function; Identified by match to protein family HMM PF01934.	Conserved hypothetical protein.	0.773
ACI20414.1	ACI20720.1	THEYE_A1208	THEYE_A1199	Protein of unknown function; Identified by match to protein family HMM PF01934.	Conserved hypothetical protein; Identified by match to protein family HMM PF01910; match to protein family HMM TIGR00106.	0.551
ACI20414.1	ACI20798.1	THEYE_A1208	THEYE_A1212	Protein of unknown function; Identified by match to protein family HMM PF01934.	Hypothetical protein; Identified by glimmer; putative.	0.404
ACI20414.1	ACI21007.1	THEYE_A1208	THEYE_A1205	Protein of unknown function; Identified by match to protein family HMM PF01934.	Conserved hypothetical protein.	0.773
ACI20414.1	ACI21078.1	THEYE_A1208	THEYE_A1574	Protein of unknown function; Identified by match to protein family HMM PF01934.	Protein of unknown function; Identified by match to protein family HMM PF01934.	0.848
ACI20414.1	ACI21095.1	THEYE_A1208	THEYE_A1626	Protein of unknown function; Identified by match to protein family HMM PF01934.	Protein of unknown function; Identified by match to protein family HMM PF01934.	0.773
ACI20414.1	ACI21190.1	THEYE_A1208	THEYE_A1201	Protein of unknown function; Identified by match to protein family HMM PF01934.	Mosc domain protein; Identified by match to protein family HMM PF03473.	0.601
ACI20414.1	ACI21213.1	THEYE_A1208	THEYE_A1209	Protein of unknown function; Identified by match to protein family HMM PF01934.	Lipoprotein, putative.	0.773