(40 nodes) DNA breaking-rejoining enzyme, catalytic core network (Acetivibrio ethanolgignens)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	KSV59648.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the 'phage' integrase family. (209 aa)
	KSV59038.1	Integrase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the 'phage' integrase family. (457 aa)
	KSV59075.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (121 aa)
	KSV59092.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (131 aa)
	KSV58643.1	Integrase; Derived by automated computational analysis using gene prediction method: Protein Homology. (401 aa)
	KSV57812.1	Integrase; Derived by automated computational analysis using gene prediction method: Protein Homology. (191 aa)
	KSV60150.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the 'phage' integrase family. (288 aa)
	KSV60179.1	Integrase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the 'phage' integrase family. (328 aa)
	KSV59924.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the 'phage' integrase family. (342 aa)
	KSV59701.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the 'phage' integrase family. (418 aa)
	KSV59455.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (128 aa)
	KSV59279.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (165 aa)
	KSV59172.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the 'phage' integrase family. (360 aa)
	KSV58218.1	Integrase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the 'phage' integrase family. (420 aa)
	KSV58141.1	Integrase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the 'phage' integrase family. (432 aa)
	KSV58002.1	Integrase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the 'phage' integrase family. (357 aa)
	KSV57754.1	Integrase; Derived by automated computational analysis using gene prediction method: Protein Homology. (194 aa)
	KSV57757.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the 'phage' integrase family. (112 aa)
	KSV57758.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (202 aa)
	KSV57721.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the 'phage' integrase family. (325 aa)
	KSV57562.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the 'phage' integrase family. (383 aa)
	KSV57395.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the 'phage' integrase family. (404 aa)
	KSV57396.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (325 aa)
	KSV57397.1	Recombinase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the 'phage' integrase family. (342 aa)
	ASU35_16545	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the 'phage' integrase family. (400 aa)
	KSV60496.1	Integrase; Derived by automated computational analysis using gene prediction method: Protein Homology. (192 aa)
	KSV60487.1	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the 'phage' integrase family. (426 aa)
	KSV60475.1	Integrase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the 'phage' integrase family. (321 aa)
	KSV60358.1	Recombinase XerD; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the 'phage' integrase family. (381 aa)
	KSV60233.1	Integrase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the 'phage' integrase family. (356 aa)
	ASU35_17395	Integrase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the 'phage' integrase family. (337 aa)
	KSV60135.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (328 aa)
	KSV60136.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the 'phage' integrase family. (403 aa)
	KSV60067.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the 'phage' integrase family. (367 aa)
	KSV60057.1	Integrase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the 'phage' integrase family. (282 aa)
	KSV60050.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the 'phage' integrase family. (288 aa)
	ASU35_17740	Phage_integrase domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (238 aa)
	KSV59903.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the 'phage' integrase family. (333 aa)
	KSV59829.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (112 aa)
	KSV59749.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (105 aa)

Your Current Organism:

Acetivibrio ethanolgignens

NCBI taxonomy Id: 290052
Other names: A. ethanolgignens, ATCC 33324, Acetivibrio ethanoligignens, DSM 3005, LMG 7055, LMG:7055, strain 77-6

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... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ASU35_16545	ASU35_17395	ASU35_16545	ASU35_17395	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the 'phage' integrase family.	Integrase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the 'phage' integrase family.	0.567
ASU35_16545	ASU35_17740	ASU35_16545	ASU35_17740	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the 'phage' integrase family.	Phage_integrase domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.498
ASU35_16545	KSV57395.1	ASU35_16545	ASU35_16410	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the 'phage' integrase family.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the 'phage' integrase family.	0.553
ASU35_16545	KSV57396.1	ASU35_16545	ASU35_16415	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the 'phage' integrase family.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.440
ASU35_16545	KSV57397.1	ASU35_16545	ASU35_16420	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the 'phage' integrase family.	Recombinase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the 'phage' integrase family.	0.604
ASU35_16545	KSV57721.1	ASU35_16545	ASU35_15375	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the 'phage' integrase family.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the 'phage' integrase family.	0.740
ASU35_16545	KSV59279.1	ASU35_16545	ASU35_09780	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the 'phage' integrase family.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.540
ASU35_16545	KSV59924.1	ASU35_16545	ASU35_07225	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the 'phage' integrase family.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the 'phage' integrase family.	0.604
ASU35_16545	KSV60050.1	ASU35_16545	ASU35_17570	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the 'phage' integrase family.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the 'phage' integrase family.	0.563
ASU35_16545	KSV60057.1	ASU35_16545	ASU35_17530	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the 'phage' integrase family.	Integrase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the 'phage' integrase family.	0.617
ASU35_16545	KSV60135.1	ASU35_16545	ASU35_17400	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the 'phage' integrase family.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.460
ASU35_16545	KSV60136.1	ASU35_16545	ASU35_17405	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the 'phage' integrase family.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the 'phage' integrase family.	0.500
ASU35_16545	KSV60150.1	ASU35_16545	ASU35_06190	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the 'phage' integrase family.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the 'phage' integrase family.	0.609
ASU35_17395	ASU35_16545	ASU35_17395	ASU35_16545	Integrase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the 'phage' integrase family.	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the 'phage' integrase family.	0.567
ASU35_17395	ASU35_17740	ASU35_17395	ASU35_17740	Integrase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the 'phage' integrase family.	Phage_integrase domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.773
ASU35_17395	KSV57395.1	ASU35_17395	ASU35_16410	Integrase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the 'phage' integrase family.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the 'phage' integrase family.	0.775
ASU35_17395	KSV57721.1	ASU35_17395	ASU35_15375	Integrase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the 'phage' integrase family.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the 'phage' integrase family.	0.417
ASU35_17395	KSV57758.1	ASU35_17395	ASU35_15220	Integrase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the 'phage' integrase family.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.474
ASU35_17395	KSV59749.1	ASU35_17395	ASU35_18000	Integrase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the 'phage' integrase family.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.703
ASU35_17395	KSV59903.1	ASU35_17395	ASU35_17745	Integrase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the 'phage' integrase family.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the 'phage' integrase family.	0.761