(16 nodes) Mixed, incl. Cytosolic large ribosomal subunit, and Ribosomal_S17 N-terminal network (Emiliania huxleyi)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	rps4	30S ribosomal protein S4, chloroplastic; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. Belongs to the universal ribosomal protein uS4 family. (202 aa)
	R1BCG6_EMIHU	Ribos_L4_asso_C domain-containing protein. (339 aa)
	R1C4S4_EMIHU	Ribosomal_L18e/L15P domain-containing protein; Belongs to the universal ribosomal protein uL15 family. (67 aa)
	R1C9Q0_EMIHU	Coproporphyrinogen III oxidase. (431 aa)
	R1CJ46_EMIHU	Ribosomal_S5_C domain-containing protein. (89 aa)
	R1CSW1_EMIHU	Uncharacterized protein; Belongs to the universal ribosomal protein uL3 family. (270 aa)
	R1D344_EMIHU	Ribosomal_S17_N domain-containing protein. (163 aa)
	R1D6R5_EMIHU	KH type-2 domain-containing protein. (229 aa)
	R1D864_EMIHU	60S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10. (317 aa)
	R1DWK9_EMIHU	Uncharacterized protein; Belongs to the universal ribosomal protein uS13 family. (118 aa)
	R1EDQ1_EMIHU	Uncharacterized protein. (67 aa)
	RPL13	60S ribosomal protein L13; Belongs to the eukaryotic ribosomal protein eL13 family. (191 aa)
	R1FDK0_EMIHU	Ubiquitin-like domain-containing protein. (76 aa)
	R1FEU5_EMIHU	KOW domain-containing protein. (142 aa)
	R1FHB6_EMIHU	40S ribosomal protein S13; Belongs to the universal ribosomal protein uS15 family. (151 aa)
	R1G2L1_EMIHU	Ribosomal_L18_c domain-containing protein. (79 aa)

Your Current Organism:

Emiliania huxleyi

NCBI taxonomy Id: 2903
Other names: E. huxleyi, Emiliania huxleyi (Lohmann) W.W.Hay & H.P.Mohler, Gephyrocapsa huxleyi, Pontosphaera huxleyi

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
R1BCG6_EMIHU	R1C4S4_EMIHU	R1BCG6	R1C4S4	Ribos_L4_asso_C domain-containing protein.	Ribosomal_L18e/L15P domain-containing protein; Belongs to the universal ribosomal protein uL15 family.	0.995
R1BCG6_EMIHU	R1C9Q0_EMIHU	R1BCG6	R1C9Q0	Ribos_L4_asso_C domain-containing protein.	Coproporphyrinogen III oxidase.	0.994
R1BCG6_EMIHU	R1CJ46_EMIHU	R1BCG6	R1CJ46	Ribos_L4_asso_C domain-containing protein.	Ribosomal_S5_C domain-containing protein.	0.993
R1BCG6_EMIHU	R1CSW1_EMIHU	R1BCG6	R1CSW1	Ribos_L4_asso_C domain-containing protein.	Uncharacterized protein; Belongs to the universal ribosomal protein uL3 family.	0.995
R1BCG6_EMIHU	R1D344_EMIHU	R1BCG6	R1D344	Ribos_L4_asso_C domain-containing protein.	Ribosomal_S17_N domain-containing protein.	0.994
R1BCG6_EMIHU	R1D6R5_EMIHU	R1BCG6	R1D6R5	Ribos_L4_asso_C domain-containing protein.	KH type-2 domain-containing protein.	0.996
R1BCG6_EMIHU	R1D864_EMIHU	R1BCG6	R1D864	Ribos_L4_asso_C domain-containing protein.	60S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10.	0.994
R1BCG6_EMIHU	R1DWK9_EMIHU	R1BCG6	R1DWK9	Ribos_L4_asso_C domain-containing protein.	Uncharacterized protein; Belongs to the universal ribosomal protein uS13 family.	0.992
R1BCG6_EMIHU	R1EDQ1_EMIHU	R1BCG6	R1EDQ1	Ribos_L4_asso_C domain-containing protein.	Uncharacterized protein.	0.996
R1BCG6_EMIHU	R1FDK0_EMIHU	R1BCG6	R1FDK0	Ribos_L4_asso_C domain-containing protein.	Ubiquitin-like domain-containing protein.	0.987
R1BCG6_EMIHU	R1FEU5_EMIHU	R1BCG6	R1FEU5	Ribos_L4_asso_C domain-containing protein.	KOW domain-containing protein.	0.995
R1BCG6_EMIHU	R1FHB6_EMIHU	R1BCG6	R1FHB6	Ribos_L4_asso_C domain-containing protein.	40S ribosomal protein S13; Belongs to the universal ribosomal protein uS15 family.	0.995
R1BCG6_EMIHU	R1G2L1_EMIHU	R1BCG6	R1G2L1	Ribos_L4_asso_C domain-containing protein.	Ribosomal_L18_c domain-containing protein.	0.996
R1BCG6_EMIHU	RPL13	R1BCG6	R1F7W5	Ribos_L4_asso_C domain-containing protein.	60S ribosomal protein L13; Belongs to the eukaryotic ribosomal protein eL13 family.	0.995
R1BCG6_EMIHU	rps4	R1BCG6	Q4G3A4	Ribos_L4_asso_C domain-containing protein.	30S ribosomal protein S4, chloroplastic; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. Belongs to the universal ribosomal protein uS4 family.	0.992
R1C4S4_EMIHU	R1BCG6_EMIHU	R1C4S4	R1BCG6	Ribosomal_L18e/L15P domain-containing protein; Belongs to the universal ribosomal protein uL15 family.	Ribos_L4_asso_C domain-containing protein.	0.995
R1C4S4_EMIHU	R1C9Q0_EMIHU	R1C4S4	R1C9Q0	Ribosomal_L18e/L15P domain-containing protein; Belongs to the universal ribosomal protein uL15 family.	Coproporphyrinogen III oxidase.	0.992
R1C4S4_EMIHU	R1CJ46_EMIHU	R1C4S4	R1CJ46	Ribosomal_L18e/L15P domain-containing protein; Belongs to the universal ribosomal protein uL15 family.	Ribosomal_S5_C domain-containing protein.	0.987
R1C4S4_EMIHU	R1CSW1_EMIHU	R1C4S4	R1CSW1	Ribosomal_L18e/L15P domain-containing protein; Belongs to the universal ribosomal protein uL15 family.	Uncharacterized protein; Belongs to the universal ribosomal protein uL3 family.	0.996
R1C4S4_EMIHU	R1D344_EMIHU	R1C4S4	R1D344	Ribosomal_L18e/L15P domain-containing protein; Belongs to the universal ribosomal protein uL15 family.	Ribosomal_S17_N domain-containing protein.	0.989